U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    haf-9 ABC-type antigen peptide transporter [ Caenorhabditis elegans ]

    Gene ID: 172288, updated on 4-Jan-2025

    Summary

    Official Symbol
    haf-9
    Official Full Name
    ABC-type antigen peptide transporter
    Primary source
    WormBase:WBGene00001819
    Locus tag
    CELE_ZK484.2
    See related
    AllianceGenome:WB:WBGene00001819
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable ATPase-coupled transmembrane transporter activity. Involved in lysosomal transport and regulatory ncRNA-mediated post-transcriptional gene silencing. Located in lysosomal membrane. Is expressed in intestine and rectal gland cell. Orthologous to human ABCB9 (ATP binding cassette subfamily B member 9). [provided by Alliance of Genome Resources, Jan 2025]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See haf-9 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    16
    Sequence:
    Chromosome: I; NC_003279.8 (6081812..6085957)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Histone H1 Neighboring gene Treslin STD domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene MS Related Protein Neighboring gene Phosphoglycerate mutase family protein

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    General gene information

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables ABC-type transporter activity  
    enables ATP binding  
    enables ATP hydrolysis activity  
    enables ATPase-coupled transmembrane transporter activity  
    enables peptide transmembrane transporter activity  
    Process Evidence Code Pubs
    involved_in adaptive immune response  
    involved_in lysosomal transport PubMed 
    involved_in multicellular organism growth PubMed 
    involved_in peptide transport  
    involved_in regulatory ncRNA-mediated post-transcriptional gene silencing PubMed 
    involved_in response to chemical  
    involved_in transmembrane transport  
    involved_in transmembrane transport  
    Component Evidence Code Pubs
    located_in lysosomal membrane PubMed 
    is_active_in membrane  
    located_in membrane PubMed 
    located_in membrane  

    General protein information

    Preferred Names
    ABC-type antigen peptide transporter
    NP_491754.1
    • Confirmed by transcript evidence
    NP_871810.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      6081812..6085957
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_059353.8 → NP_491754.1  ABC-type antigen peptide transporter [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_491754.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O44897
      Conserved Domains (1) summary
      TIGR00958
      Location:19 → 757
      3a01208; Conjugate Transporter-2 (CT2) Family protein
    2. NM_182010.5 → NP_871810.1  ABC-type antigen peptide transporter [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_871810.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IA64
      Conserved Domains (1) summary
      TIGR00958
      Location:19 → 664
      3a01208; Conjugate Transporter-2 (CT2) Family protein
    External link. Please review our privacy policy.