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    clik-3 CaLponIn-liKe proteins [ Caenorhabditis elegans ]

    Gene ID: 186951, updated on 28-Oct-2024

    Summary

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    Official Symbol
    clik-3
    Official Full Name
    CaLponIn-liKe proteins
    Primary source
    WormBase:WBGene00019361
    Locus tag
    CELE_K03E5.2
    See related
    AllianceGenome:WB:WBGene00019361
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See clik-3 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    6
    Sequence:
    Chromosome: I; NC_003279.8 (3419600..3424211)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Cyclin-dependent kinase 2;Protein kinase domain-containing protein Neighboring gene ncRNA Neighboring gene CUB domain-containing protein Neighboring gene Separin homolog sep-1 Neighboring gene non-specific serine/threonine protein kinase Neighboring gene Protein kinase domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An Efficient Genome Editing Strategy To Generate Putative Null Mutants in Caenorhabditis elegans Using CRISPR/Cas9. Wang H, et al. G3 (Bethesda), 2018 Nov 6. PMID 30224336, Free PMC Article
    2. Cell-specific proteomic analysis in Caenorhabditis elegans. Yuet KP, et al. Proc Natl Acad Sci U S A, 2015 Mar 3. PMID 25691744, Free PMC Article
    3. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    CaLponIn-liKe proteins
    NP_001021535.1
    • Confirmed by transcript evidence;
      Product from WormBase gene class clik
    NP_001021536.1
    • Confirmed by transcript evidence;
      Product from WormBase gene class clik
    NP_001040674.1
    • Confirmed by transcript evidence;
      Product from WormBase gene class clik
    NP_001249366.1
    • Confirmed by transcript evidence;
      Product from WormBase gene class clik

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      3419600..3424211
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001026364.5 → NP_001021535.1  CaLponIn-liKe proteins [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001021535.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O61848
      Conserved Domains (2) summary
      pfam00402
      Location:148 → 169
      Calponin; Calponin family repeat
      cl21506
      Location:17 → 41
      DinB_2; DinB superfamily

    2. NM_001262437.2 → NP_001249366.1  CaLponIn-liKe proteins [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001249366.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZW1
      Conserved Domains (2) summary
      pfam00402
      Location:50 → 72
      Calponin; Calponin family repeat
      cl21506
      Location:17 → 41
      DinB_2; DinB superfamily

    3. NM_001026365.4 → NP_001021536.1  CaLponIn-liKe proteins [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001021536.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZW0
      Conserved Domains (2) summary
      pfam00402
      Location:99 → 120
      Calponin; Calponin family repeat
      cl21506
      Location:17 → 41
      DinB_2; DinB superfamily

    4. NM_001047209.5 → NP_001040674.1  CaLponIn-liKe proteins [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001040674.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q2MGE5
    Nucleotide Protein
    Heading Accession and Version

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