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    PEX5 peroxisomal biogenesis factor 5 [ Bos taurus (domestic cattle) ]

    Gene ID: 514832, updated on 30-Jan-2025

    Summary

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    Official Symbol
    PEX5provided by VGNC
    Official Full Name
    peroxisomal biogenesis factor 5provided by VGNC
    Primary source
    VGNC:VGNC:32761
    See related
    BGD:BT20895; EnsemblRapid:ENSBTAG00070030913
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PEX5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (103177657..103195040, complement)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene antigen WC1.1-like Neighboring gene transmembrane emp24 domain-containing protein 7-like Neighboring gene TP53-regulated inhibitor of apoptosis 1-like Neighboring gene calsyntenin 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Clone Names

    • MGC138089

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peroxisome matrix targeting signal-1 binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein import into peroxisome matrix, docking IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxisomal biogenesis factor 5
    Names
    PTS1 receptor
    PTS1-BP
    PTS1R
    peroxin-5
    peroxisomal C-terminal targeting signal import receptor
    peroxisomal targeting signal 1 receptor
    peroxisome receptor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046183.1 → NP_001039648.1  peroxisomal biogenesis factor 5

      See identical proteins and their annotated locations for NP_001039648.1

      Status: PROVISIONAL

      Source sequence(s)
      BC114692
      UniProtKB/Swiss-Prot
      A1L572, Q1RMV0
      Related
      ENSBTAP00070042692.1, ENSBTAT00070070127.1
      Conserved Domains (2) summary
      TIGR02917
      Location:347 → 584
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:489 → 517
      TPR; TPR repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      103177657..103195040 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024991695.2 → XP_024847463.1  peroxisomal biogenesis factor 5 isoform X3

      UniProtKB/TrEMBL
      A0AAF6ZLB7
      Related
      ENSBTAP00070042714.1, ENSBTAT00070070160.1
      Conserved Domains (2) summary
      sd00006
      Location:452 → 480
      TPR; TPR repeat [structural motif]
      cl26002
      Location:310 → 547
      TPR_11; TPR repeat

    2. XM_015471306.3 → XP_015326792.1  peroxisomal biogenesis factor 5 isoform X4

      Conserved Domains (3) summary
      sd00006
      Location:444 → 472
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:444 → 477
      TPR_1; Tetratricopeptide repeat
      pfam13414
      Location:443 → 509
      TPR_11; TPR repeat

    3. XM_010805583.4 → XP_010803885.1  peroxisomal biogenesis factor 5 isoform X3

      See identical proteins and their annotated locations for XP_010803885.1

      UniProtKB/TrEMBL
      A0AAF6ZLB7
      Conserved Domains (2) summary
      sd00006
      Location:452 → 480
      TPR; TPR repeat [structural motif]
      cl26002
      Location:310 → 547
      TPR_11; TPR repeat

    4. XM_015471305.3 → XP_015326791.1  peroxisomal biogenesis factor 5 isoform X2

      Conserved Domains (3) summary
      sd00006
      Location:481 → 509
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:481 → 514
      TPR_1; Tetratricopeptide repeat
      pfam13414
      Location:480 → 546
      TPR_11; TPR repeat

    5. XM_005207137.5 → XP_005207194.1  peroxisomal biogenesis factor 5 isoform X1

      See identical proteins and their annotated locations for XP_005207194.1

      UniProtKB/Swiss-Prot
      A1L572, Q1RMV0
      Conserved Domains (2) summary
      TIGR02917
      Location:347 → 584
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:489 → 517
      TPR; TPR repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1RMV0.1 GenPept UniProtKB/Swiss-Prot:Q1RMV0

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