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    CPNE2 copine 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 782388, updated on 27-Dec-2024

    Summary

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    Official Symbol
    CPNE2provided by VGNC
    Official Full Name
    copine 2provided by VGNC
    Primary source
    VGNC:VGNC:27659
    See related
    Ensembl:ENSBTAG00000002233
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CPNE2 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (25111036..25166257)

    Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene microRNA mir-2285g-1 Neighboring gene NLR family CARD domain containing 5 Neighboring gene microRNA mir-2285n-3 Neighboring gene uncharacterized LOC101908034 Neighboring gene proteasome activator subunit 3 interacting protein 1 Neighboring gene ring finger and SPRY domain containing 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A second generation radiation hybrid map to aid the assembly of the bovine genome sequence. Jann OC, et al. BMC Genomics, 2006 Nov 6. PMID 17087818, Free PMC Article
    2. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    3. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-dependent phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to calcium ion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    copine-2
    Names
    copine II

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001243331.1 → NP_001230260.1  copine-2

      Status: VALIDATED

      Source sequence(s)
      BT029810, CO894664, NKLS02000018
      UniProtKB/TrEMBL
      A1L523, F1MS45
      Conserved Domains (3) summary
      cd04047
      Location:155 → 266
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:24 → 141
      C2A_Copine; C2 domain first repeat in Copine
      pfam07002
      Location:326 → 542
      Copine; Copine

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      25111036..25166257
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005218746.5 → XP_005218803.1  copine-2 isoform X1

      UniProtKB/TrEMBL
      A1L523, F1MS45
      Related
      ENSBTAP00000040120.5, ENSBTAT00000040344.6
      Conserved Domains (3) summary
      cd04047
      Location:155 → 266
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:24 → 141
      C2A_Copine; C2 domain first repeat in Copine
      pfam07002
      Location:326 → 542
      Copine; Copine
    Nucleotide Protein
    Heading Accession and Version

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