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    Pectate lyase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822010, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pectate lyase family protein
    Primary source
    TAIR:AT3G24230
    Locus tag
    AT3G24230
    See related
    Araport:AT3G24230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (8774541..8777612)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene CLAVATA3/ESR-RELATED 19 Neighboring gene ncRNA Neighboring gene Leucine-rich repeat receptor-like protein kinase family protein Neighboring gene glycine-rich protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_113328.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lyase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables pectate lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in pectin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pectate lyase family protein
    NP_189065.2
    • Pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G13710.2); Has 1589 Blast hits to 1579 proteins in 269 species: Archae - 0; Bacteria - 695; Metazoa - 0; Fungi - 186; Plants - 699; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8774541..8777612
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113328.3 → NP_189065.2  Pectate lyase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189065.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LRM5
      UniProtKB/TrEMBL
      A0A5S9XFJ6, A0A654FB66
      Conserved Domains (1) summary
      smart00656
      Location:178 → 373
      Amb_all; Amb_all domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LRM5.1

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