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    COL16A1 collagen type XVI alpha 1 chain [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 706149, updated on 17-Aug-2024

    Summary

    Official Symbol
    COL16A1provided by VGNC
    Official Full Name
    collagen type XVI alpha 1 chainprovided by VGNC
    Primary source
    VGNC:VGNC:71293
    See related
    Ensembl:ENSMMUG00000023398
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
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    Genomic context

    See COL16A1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    73
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (192965557..193019204)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (30705352..30756988, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene SPOC domain containing 1 Neighboring gene uncharacterized LOC106997348 Neighboring gene adhesion G protein-coupled receptor B2 Neighboring gene penta-EF-hand domain containing 1 Neighboring gene hypocretin receptor 1

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    collagen alpha-1(XVI) chain

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      192965557..193019204
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015133782.2XP_014989268.2  collagen alpha-1(XVI) chain isoform X1

      UniProtKB/TrEMBL
      F7FE47
      Related
      ENSMMUP00000030804.4, ENSMMUT00000032922.4
      Conserved Domains (3) summary
      pfam01391
      Location:375433
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:50231
      TSPN; Thrombospondin N-terminal -like domains
      pfam09606
      Location:686910
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    2. XM_015133783.2XP_014989269.2  collagen alpha-1(XVI) chain isoform X2

      UniProtKB/TrEMBL
      F7FE47
      Conserved Domains (3) summary
      pfam01391
      Location:375433
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:50231
      TSPN; Thrombospondin N-terminal -like domains
      pfam09606
      Location:686910
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    3. XM_015133791.2XP_014989277.2  collagen alpha-1(XVI) chain isoform X3

      UniProtKB/TrEMBL
      F7FE47
      Conserved Domains (3) summary
      pfam01391
      Location:375433
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:50231
      TSPN; Thrombospondin N-terminal -like domains
      pfam09606
      Location:686975
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    4. XM_015133801.2XP_014989287.2  collagen alpha-1(XVI) chain isoform X4

      Conserved Domains (3) summary
      pfam01391
      Location:375433
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:50231
      TSPN; Thrombospondin N-terminal -like domains
      pfam09606
      Location:686975
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    5. XM_028836733.1XP_028692566.1  collagen alpha-1(XVI) chain isoform X5

      UniProtKB/TrEMBL
      F7FE47
      Conserved Domains (3) summary
      pfam01391
      Location:316374
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:4172
      TSPN; Thrombospondin N-terminal -like domains
      pfam09606
      Location:625851
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    6. XM_028836737.1XP_028692570.1  collagen alpha-1(XVI) chain isoform X6

      Conserved Domains (2) summary
      pfam01391
      Location:466513
      Collagen; Collagen triple helix repeat (20 copies)
      PRK07764
      Location:397585
      PRK07764; DNA polymerase III subunits gamma and tau; Validated

    RNA

    1. XR_003723845.1 RNA Sequence