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    GIN1 gypsy retrotransposon integrase 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 703340, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GIN1provided by VGNC
    Official Full Name
    gypsy retrotransposon integrase 1provided by VGNC
    Primary source
    VGNC:VGNC:73015
    Locus tag
    EGK_16729
    See related
    Ensembl:ENSMMUG00000007786
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See GIN1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (100473482..100507559, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (100411901..100445959, complement)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene peptidylglycine alpha-amidating monooxygenase Neighboring gene eukaryotic translation initiation factor 3 subunit K pseudogene Neighboring gene diphosphoinositol pentakisphosphate kinase 2 Neighboring gene uncharacterized LOC114678870 Neighboring gene macrophage immunometabolism regulator

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA integration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gypsy retrotransposon integrase-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194084.2 → NP_001181013.1  gypsy retrotransposon integrase-like protein 1

      See identical proteins and their annotated locations for NP_001181013.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000389
      UniProtKB/TrEMBL
      A0A8J8XEQ2, F7CQI9, G7MVI1, H9Z0F5
      Related
      ENSMMUP00000010230.4, ENSMMUT00000010904.4
      Conserved Domains (2) summary
      pfam17921
      Location:65 → 124
      Integrase_H2C2; Integrase zinc binding domain
      cl21549
      Location:159 → 226
      rve; Integrase core domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      100473482..100507559 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028849183.1 → XP_028705016.1  gypsy retrotransposon integrase-like protein 1 isoform X1

      Conserved Domains (1) summary
      cl21549
      Location:12 → 101
      rve; Integrase core domain
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials