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    PRPF40A pre-mRNA processing factor 40 homolog A [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696668, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PRPF40Aprovided by VGNC
    Official Full Name
    pre-mRNA processing factor 40 homolog Aprovided by VGNC
    Primary source
    VGNC:VGNC:76266
    See related
    Ensembl:ENSMMUG00000010812
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PRPF40A in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (39771557..39838248, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 12 NC_027904.1 (39195108..39262608, complement)

    Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106992581 Neighboring gene signal transducing adaptor molecule 2 Neighboring gene nuclear migration protein nudC pseudogene Neighboring gene formin like 2 Neighboring gene ADP ribosylation factor like GTPase 6 interacting protein 6 Neighboring gene ATP synthase F(0) complex subunit B1, mitochondrial pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-processing factor 40 homolog A
    Names
    PRP40 pre-mRNA processing factor 40 homolog A
    formin binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041765.1 Reference Mmul_10 Primary Assembly

      Range
      39771557..39838248 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028830714.1 → XP_028686547.1  pre-mRNA-processing factor 40 homolog A isoform X11

      UniProtKB/TrEMBL
      F7GA38, H9FWX7
      Conserved Domains (1) summary
      COG5104
      Location:54 → 699
      PRP40; Splicing factor [RNA processing and modification]

    2. XM_015110126.2 → XP_014965612.1  pre-mRNA-processing factor 40 homolog A isoform X6

      UniProtKB/TrEMBL
      G7N840
      Conserved Domains (1) summary
      COG5104
      Location:174 → 833
      PRP40; Splicing factor [RNA processing and modification]

    3. XM_015110127.2 → XP_014965613.1  pre-mRNA-processing factor 40 homolog A isoform X5

      UniProtKB/TrEMBL
      G7N840
      Conserved Domains (1) summary
      COG5104
      Location:174 → 837
      PRP40; Splicing factor [RNA processing and modification]

    4. XM_028830715.1 → XP_028686548.1  pre-mRNA-processing factor 40 homolog A isoform X12

      UniProtKB/TrEMBL
      F7GA38, H9FWX7
      Conserved Domains (1) summary
      COG5104
      Location:54 → 695
      PRP40; Splicing factor [RNA processing and modification]

    5. XM_028830713.1 → XP_028686546.1  pre-mRNA-processing factor 40 homolog A isoform X10

      UniProtKB/TrEMBL
      F7GA38, H9FWX7
      Related
      ENSMMUP00000014166.4, ENSMMUT00000015115.4
      Conserved Domains (1) summary
      COG5104
      Location:54 → 713
      PRP40; Splicing factor [RNA processing and modification]

    6. XM_028830716.1 → XP_028686549.1  pre-mRNA-processing factor 40 homolog A isoform X12

      UniProtKB/TrEMBL
      F7GA38, H9FWX7
      Conserved Domains (1) summary
      COG5104
      Location:54 → 695
      PRP40; Splicing factor [RNA processing and modification]

    7. XM_028830712.1 → XP_028686545.1  pre-mRNA-processing factor 40 homolog A isoform X9

      UniProtKB/TrEMBL
      F7GA38, H9FWX7
      Conserved Domains (1) summary
      COG5104
      Location:54 → 717
      PRP40; Splicing factor [RNA processing and modification]

    8. XM_028830710.1 → XP_028686543.1  pre-mRNA-processing factor 40 homolog A isoform X8

      UniProtKB/TrEMBL
      G7N840
      Conserved Domains (1) summary
      COG5104
      Location:174 → 815
      PRP40; Splicing factor [RNA processing and modification]

    9. XM_028830709.1 → XP_028686542.1  pre-mRNA-processing factor 40 homolog A isoform X7

      UniProtKB/TrEMBL
      G7N840
      Related
      ENSMMUP00000038341.3, ENSMMUT00000045316.3
      Conserved Domains (1) summary
      COG5104
      Location:174 → 819
      PRP40; Splicing factor [RNA processing and modification]

    10. XM_028830708.1 → XP_028686541.1  pre-mRNA-processing factor 40 homolog A isoform X4

      UniProtKB/TrEMBL
      G7N840
      Conserved Domains (1) summary
      COG5104
      Location:216 → 857
      PRP40; Splicing factor [RNA processing and modification]

    11. XM_028830707.1 → XP_028686540.1  pre-mRNA-processing factor 40 homolog A isoform X3

      UniProtKB/TrEMBL
      G7N840
      Conserved Domains (1) summary
      COG5104
      Location:216 → 861
      PRP40; Splicing factor [RNA processing and modification]

    12. XM_015110125.2 → XP_014965611.1  pre-mRNA-processing factor 40 homolog A isoform X2

      UniProtKB/TrEMBL
      G7N840
      Related
      ENSMMUP00000070269.1, ENSMMUT00000081277.1
      Conserved Domains (1) summary
      COG5104
      Location:216 → 875
      PRP40; Splicing factor [RNA processing and modification]

    13. XM_015110124.2 → XP_014965610.1  pre-mRNA-processing factor 40 homolog A isoform X1

      UniProtKB/TrEMBL
      G7N840
      Conserved Domains (1) summary
      COG5104
      Location:216 → 879
      PRP40; Splicing factor [RNA processing and modification]
    Nucleotide Protein
    Heading Accession and Version

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