pre-mRNA-processing factor 40 homolog A isoform X12 [Macaca mulatta]
PRP40 family protein( domain architecture ID 1003925)
PRP40 family protein similar to Homo sapiens pre-mRNA-processing factor 40 homolog A that binds to WASL/N-WASP and suppresses its translocation from the nucleus to the cytoplasm, thereby inhibiting its cytoplasmic function
List of domain hits
Name | Accession | Description | Interval | E-value | ||||||||||
PRP40 super family | cl34905 | Splicing factor [RNA processing and modification]; |
54-695 | 1.79e-47 | ||||||||||
Splicing factor [RNA processing and modification]; The actual alignment was detected with superfamily member COG5104: Pssm-ID: 227435 [Multi-domain] Cd Length: 590 Bit Score: 178.74 E-value: 1.79e-47
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Name | Accession | Description | Interval | E-value | ||||||||||
PRP40 | COG5104 | Splicing factor [RNA processing and modification]; |
54-695 | 1.79e-47 | ||||||||||
Splicing factor [RNA processing and modification]; Pssm-ID: 227435 [Multi-domain] Cd Length: 590 Bit Score: 178.74 E-value: 1.79e-47
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FF | pfam01846 | FF domain; This domain has been predicted to be involved in protein-protein interaction. This ... |
294-343 | 1.96e-14 | ||||||||||
FF domain; This domain has been predicted to be involved in protein-protein interaction. This domain was recently shown to bind the hyperphosphorylated C-terminal repeat domain of RNA polymerase II, confirming its role in protein-protein interactions. Pssm-ID: 426471 [Multi-domain] Cd Length: 50 Bit Score: 67.87 E-value: 1.96e-14
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WW | cd00201 | Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; ... |
63-90 | 2.45e-11 | ||||||||||
Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs. Pssm-ID: 238122 [Multi-domain] Cd Length: 31 Bit Score: 58.69 E-value: 2.45e-11
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WW | smart00456 | Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds ... |
63-90 | 7.63e-11 | ||||||||||
Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Pssm-ID: 197736 [Multi-domain] Cd Length: 33 Bit Score: 57.23 E-value: 7.63e-11
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PHA03255 | PHA03255 | BDLF3; Provisional |
144-286 | 1.19e-04 | ||||||||||
BDLF3; Provisional Pssm-ID: 165513 [Multi-domain] Cd Length: 234 Bit Score: 44.51 E-value: 1.19e-04
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Name | Accession | Description | Interval | E-value | ||||||||||
PRP40 | COG5104 | Splicing factor [RNA processing and modification]; |
54-695 | 1.79e-47 | ||||||||||
Splicing factor [RNA processing and modification]; Pssm-ID: 227435 [Multi-domain] Cd Length: 590 Bit Score: 178.74 E-value: 1.79e-47
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FF | pfam01846 | FF domain; This domain has been predicted to be involved in protein-protein interaction. This ... |
294-343 | 1.96e-14 | ||||||||||
FF domain; This domain has been predicted to be involved in protein-protein interaction. This domain was recently shown to bind the hyperphosphorylated C-terminal repeat domain of RNA polymerase II, confirming its role in protein-protein interactions. Pssm-ID: 426471 [Multi-domain] Cd Length: 50 Bit Score: 67.87 E-value: 1.96e-14
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WW | cd00201 | Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; ... |
63-90 | 2.45e-11 | ||||||||||
Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs. Pssm-ID: 238122 [Multi-domain] Cd Length: 31 Bit Score: 58.69 E-value: 2.45e-11
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WW | pfam00397 | WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds ... |
63-88 | 4.08e-11 | ||||||||||
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. Pssm-ID: 459800 [Multi-domain] Cd Length: 30 Bit Score: 58.29 E-value: 4.08e-11
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WW | smart00456 | Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds ... |
63-90 | 7.63e-11 | ||||||||||
Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Pssm-ID: 197736 [Multi-domain] Cd Length: 33 Bit Score: 57.23 E-value: 7.63e-11
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FF | smart00441 | Contains two conserved F residues; A novel motif that often accompanies WW domains. Often ... |
293-346 | 3.40e-09 | ||||||||||
Contains two conserved F residues; A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues. Pssm-ID: 128718 [Multi-domain] Cd Length: 55 Bit Score: 53.35 E-value: 3.40e-09
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WW | cd00201 | Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; ... |
101-131 | 1.96e-08 | ||||||||||
Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs. Pssm-ID: 238122 [Multi-domain] Cd Length: 31 Bit Score: 50.60 E-value: 1.96e-08
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WW | smart00456 | Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds ... |
100-131 | 1.99e-08 | ||||||||||
Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Pssm-ID: 197736 [Multi-domain] Cd Length: 33 Bit Score: 50.68 E-value: 1.99e-08
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FF | smart00441 | Contains two conserved F residues; A novel motif that often accompanies WW domains. Often ... |
643-697 | 5.70e-08 | ||||||||||
Contains two conserved F residues; A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues. Pssm-ID: 128718 [Multi-domain] Cd Length: 55 Bit Score: 49.88 E-value: 5.70e-08
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WW | pfam00397 | WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds ... |
103-129 | 6.68e-08 | ||||||||||
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. Pssm-ID: 459800 [Multi-domain] Cd Length: 30 Bit Score: 49.04 E-value: 6.68e-08
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FF | smart00441 | Contains two conserved F residues; A novel motif that often accompanies WW domains. Often ... |
427-486 | 5.96e-06 | ||||||||||
Contains two conserved F residues; A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues. Pssm-ID: 128718 [Multi-domain] Cd Length: 55 Bit Score: 44.10 E-value: 5.96e-06
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FF | pfam01846 | FF domain; This domain has been predicted to be involved in protein-protein interaction. This ... |
644-695 | 3.03e-05 | ||||||||||
FF domain; This domain has been predicted to be involved in protein-protein interaction. This domain was recently shown to bind the hyperphosphorylated C-terminal repeat domain of RNA polymerase II, confirming its role in protein-protein interactions. Pssm-ID: 426471 [Multi-domain] Cd Length: 50 Bit Score: 42.06 E-value: 3.03e-05
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PHA03255 | PHA03255 | BDLF3; Provisional |
144-286 | 1.19e-04 | ||||||||||
BDLF3; Provisional Pssm-ID: 165513 [Multi-domain] Cd Length: 234 Bit Score: 44.51 E-value: 1.19e-04
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FF | pfam01846 | FF domain; This domain has been predicted to be involved in protein-protein interaction. This ... |
511-563 | 1.11e-03 | ||||||||||
FF domain; This domain has been predicted to be involved in protein-protein interaction. This domain was recently shown to bind the hyperphosphorylated C-terminal repeat domain of RNA polymerase II, confirming its role in protein-protein interactions. Pssm-ID: 426471 [Multi-domain] Cd Length: 50 Bit Score: 37.44 E-value: 1.11e-03
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alt | PHA02566 | ADP-ribosyltransferase; Provisional |
252-457 | 5.49e-03 | ||||||||||
ADP-ribosyltransferase; Provisional Pssm-ID: 222881 [Multi-domain] Cd Length: 684 Bit Score: 40.50 E-value: 5.49e-03
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Herpes_BLLF1 | pfam05109 | Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
44-288 | 8.65e-03 | ||||||||||
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 39.90 E-value: 8.65e-03
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Blast search parameters | ||||
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