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    SUPT20H SPT20 homolog, SAGA complex component [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696174, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SUPT20Hprovided by VGNC
    Official Full Name
    SPT20 homolog, SAGA complex componentprovided by VGNC
    Primary source
    VGNC:VGNC:78182
    See related
    Ensembl:ENSMMUG00000003590
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    FAM48A
    Orthologs
    human mouse all
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    Genomic context

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    See SUPT20H in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 17 NC_041770.1 (15846771..15895883, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 17 NC_027909.1 (16453689..16502802, complement)

    Chromosome 17 - NC_041770.1Genomic Context describing neighboring genes Neighboring gene ragulator complex protein LAMTOR3 pseudogene Neighboring gene ALG5 dolichyl-phosphate beta-glucosyltransferase Neighboring gene exosome component 8 Neighboring gene 60S ribosomal protein L29-like Neighboring gene uncharacterized LOC106994235 Neighboring gene casein kinase 1 alpha 1 like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor SPT20 homolog
    Names
    family with sequence similarity 48, member A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041770.1 Reference Mmul_10 Primary Assembly

      Range
      15846771..15895883 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015120952.2 → XP_014976438.1  transcription factor SPT20 homolog isoform X16

      UniProtKB/TrEMBL
      G7NJZ0, H9FWU2
      Related
      ENSMMUP00000055334.2, ENSMMUT00000079083.2
      Conserved Domains (1) summary
      pfam12090
      Location:63 → 225
      Spt20; Spt20 family

    2. XM_015120946.2 → XP_014976432.1  transcription factor SPT20 homolog isoform X11

      UniProtKB/TrEMBL
      F6ZVH7, F7EMN1, H9FWU1
      Related
      ENSMMUP00000048875.1, ENSMMUT00000068864.2
      Conserved Domains (1) summary
      pfam12090
      Location:63 → 225
      Spt20; Spt20 family

    3. XM_015120943.2 → XP_014976429.1  transcription factor SPT20 homolog isoform X8

      UniProtKB/TrEMBL
      A0A5F7ZU41, G7NJZ0
      Related
      ENSMMUP00000069136.1, ENSMMUT00000091615.1
      Conserved Domains (1) summary
      pfam12090
      Location:63 → 225
      Spt20; Spt20 family

    4. XM_028837436.1 → XP_028693269.1  transcription factor SPT20 homolog isoform X14

      UniProtKB/TrEMBL
      F7EMN1
      Related
      ENSMMUP00000004795.4, ENSMMUT00000005088.4
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    5. XM_015120953.2 → XP_014976439.1  transcription factor SPT20 homolog isoform X17

      UniProtKB/TrEMBL
      G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    6. XM_015120948.2 → XP_014976434.1  transcription factor SPT20 homolog isoform X13

      UniProtKB/TrEMBL
      F7EMN1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    7. XM_015120949.2 → XP_014976435.1  transcription factor SPT20 homolog isoform X15

      UniProtKB/TrEMBL
      A0A1D5R1L6, G7NJZ0
      Related
      ENSMMUP00000054200.1, ENSMMUT00000064472.2
      Conserved Domains (1) summary
      pfam12090
      Location:64 → 226
      Spt20; Spt20 family

    8. XM_015120945.2 → XP_014976431.1  transcription factor SPT20 homolog isoform X10

      UniProtKB/TrEMBL
      F7EMN1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    9. XM_015120947.2 → XP_014976433.1  transcription factor SPT20 homolog isoform X12

      UniProtKB/TrEMBL
      G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    10. XM_015120941.2 → XP_014976427.1  transcription factor SPT20 homolog isoform X6

      UniProtKB/TrEMBL
      F7EMN1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    11. XM_015120944.2 → XP_014976430.1  transcription factor SPT20 homolog isoform X9

      UniProtKB/TrEMBL
      G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    12. XM_015120934.2 → XP_014976420.1  transcription factor SPT20 homolog isoform X4

      UniProtKB/TrEMBL
      F7EMN1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    13. XM_015120942.2 → XP_014976428.1  transcription factor SPT20 homolog isoform X7

      UniProtKB/TrEMBL
      G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    14. XM_015120926.2 → XP_014976412.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    15. XM_015120951.1 → XP_014976437.1  transcription factor SPT20 homolog isoform X15

      UniProtKB/TrEMBL
      A0A1D5R1L6, G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:64 → 226
      Spt20; Spt20 family

    16. XM_015120950.2 → XP_014976436.1  transcription factor SPT20 homolog isoform X15

      UniProtKB/TrEMBL
      A0A1D5R1L6, G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:64 → 226
      Spt20; Spt20 family

    17. XM_015120939.2 → XP_014976425.1  transcription factor SPT20 homolog isoform X5

      UniProtKB/TrEMBL
      F7EMQ1, G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:64 → 203
      Spt20; Spt20 family

    18. XM_015120936.2 → XP_014976422.1  transcription factor SPT20 homolog isoform X3

      UniProtKB/TrEMBL
      G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:65 → 204
      Spt20; Spt20 family

    19. XM_015120930.2 → XP_014976416.1  transcription factor SPT20 homolog isoform X2

      UniProtKB/TrEMBL
      G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    20. XM_028837431.1 → XP_028693264.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    21. XM_015120940.2 → XP_014976426.1  transcription factor SPT20 homolog isoform X5

      UniProtKB/TrEMBL
      F7EMQ1, G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:64 → 203
      Spt20; Spt20 family

    22. XM_015120937.2 → XP_014976423.1  transcription factor SPT20 homolog isoform X3

      UniProtKB/TrEMBL
      G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:65 → 204
      Spt20; Spt20 family

    23. XM_015120932.2 → XP_014976418.1  transcription factor SPT20 homolog isoform X2

      UniProtKB/TrEMBL
      G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    24. XM_015120931.2 → XP_014976417.1  transcription factor SPT20 homolog isoform X2

      UniProtKB/TrEMBL
      G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    25. XM_015120927.2 → XP_014976413.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    26. XM_015120929.2 → XP_014976415.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    27. XM_028837433.1 → XP_028693266.1  transcription factor SPT20 homolog isoform X3

      UniProtKB/TrEMBL
      G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:65 → 204
      Spt20; Spt20 family

    28. XM_028837428.1 → XP_028693261.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    29. XM_028837430.1 → XP_028693263.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    30. XM_028837435.1 → XP_028693268.1  transcription factor SPT20 homolog isoform X5

      UniProtKB/TrEMBL
      F7EMQ1, G7NJZ0
      Related
      ENSMMUP00000004792.4, ENSMMUT00000005085.4
      Conserved Domains (1) summary
      pfam12090
      Location:64 → 203
      Spt20; Spt20 family

    31. XM_015120933.2 → XP_014976419.1  transcription factor SPT20 homolog isoform X2

      UniProtKB/TrEMBL
      G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    32. XM_028837429.1 → XP_028693262.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      G7NJZ0
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family
    Nucleotide Protein
    Heading Accession and Version

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