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    DSC2 desmocollin 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712942, updated on 17-Aug-2024

    Summary

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    Official Symbol
    DSC2provided by VGNC
    Official Full Name
    desmocollin 2provided by VGNC
    Primary source
    VGNC:VGNC:71997
    See related
    Ensembl:ENSMMUG00000011687
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See DSC2 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 18 NC_041771.1 (51412504..51449660)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 18 NC_027910.1 (19625595..19663127, complement)

    Chromosome 18 - NC_041771.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene desmoglein 1 Neighboring gene desmocollin 1 Neighboring gene small nucleolar RNA U13 Neighboring gene desmocollin 3 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in desmosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    desmocollin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041771.1 Reference Mmul_10 Primary Assembly

      Range
      51412504..51449660
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015121771.2 → XP_014977257.2  desmocollin-2 isoform X2

      UniProtKB/TrEMBL
      F7HEJ8, I2CWK5
      Related
      ENSMMUP00000015344.3, ENSMMUT00000016375.4
      Conserved Domains (3) summary
      cd11304
      Location:247 → 351
      Cadherin_repeat; Cadherin tandem repeat domain
      smart01055
      Location:31 → 111
      Cadherin_pro; Cadherin prodomain like
      pfam00028
      Location:142 → 234
      Cadherin; Cadherin domain

    2. XM_001102096.4 → XP_001102096.3  desmocollin-2 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZKY8, I0FPP9
      Related
      ENSMMUP00000065839.1, ENSMMUT00000091137.1
      Conserved Domains (4) summary
      cd11304
      Location:247 → 351
      Cadherin_repeat; Cadherin tandem repeat domain
      smart01055
      Location:31 → 111
      Cadherin_pro; Cadherin prodomain like
      pfam01049
      Location:852 → 896
      Cadherin_C; Cadherin cytoplasmic region
      pfam00028
      Location:142 → 234
      Cadherin; Cadherin domain

    3. XM_028838279.1 → XP_028694112.1  desmocollin-2 isoform X3

      UniProtKB/TrEMBL
      F7HEK0
      Conserved Domains (3) summary
      cd11304
      Location:104 → 208
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam01049
      Location:709 → 753
      Cadherin_C; Cadherin cytoplasmic region
      pfam00028
      Location:3 → 91
      Cadherin; Cadherin domain
    Nucleotide Protein
    Heading Accession and Version

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