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    LRTM2 leucine rich repeats and transmembrane domains 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 707976, updated on 5-Mar-2024

    Summary

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    Gene symbol
    LRTM2
    Gene description
    leucine rich repeats and transmembrane domains 2
    See related
    Ensembl:ENSMMUG00000063445
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LRTM2 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (1897339..1914425)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (1910760..1928059)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114670761 Neighboring gene protein SDA1 homolog Neighboring gene adiponectin receptor 2 Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 4 Neighboring gene uncharacterized LOC114671024 Neighboring gene decapping mRNA 1B Neighboring gene calcium voltage-gated channel subunit alpha1 C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat and transmembrane domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261503.1 → NP_001248432.1  leucine-rich repeat and transmembrane domain-containing protein 2

      See identical proteins and their annotated locations for NP_001248432.1

      Status: PROVISIONAL

      Source sequence(s)
      JU335998
      UniProtKB/TrEMBL
      A0A5F8A7R3, F7GWS1
      Conserved Domains (6) summary
      TIGR00864
      Location:174 → 261
      PCC; polycystin cation channel protein
      COG4886
      Location:70 → 201
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:51 → 72
      LRR_RI; leucine-rich repeat [structural motif]
      pfam01462
      Location:39 → 67
      LRRNT; Leucine rich repeat N-terminal domain
      pfam13855
      Location:92 → 152
      LRR_8; Leucine rich repeat
      cl27544
      Location:265 → 335
      Herpes_glycop_D; Herpesvirus glycoprotein D/GG/GX domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      1897339..1914425
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015150747.2 → XP_015006233.1  leucine-rich repeat and transmembrane domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A5F8A7R3, F7GWS1
      Related
      ENSMMUP00000066487.1, ENSMMUT00000085399.1
      Conserved Domains (6) summary
      TIGR00864
      Location:174 → 261
      PCC; polycystin cation channel protein
      COG4886
      Location:70 → 201
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:51 → 72
      LRR_RI; leucine-rich repeat [structural motif]
      pfam01462
      Location:39 → 67
      LRRNT; Leucine rich repeat N-terminal domain
      pfam13855
      Location:92 → 152
      LRR_8; Leucine rich repeat
      cl27544
      Location:265 → 335
      Herpes_glycop_D; Herpesvirus glycoprotein D/GG/GX domain
    Nucleotide Protein
    Heading Accession and Version

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