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    SNX16 sorting nexin 16 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 702409, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SNX16provided by VGNC
    Official Full Name
    sorting nexin 16provided by VGNC
    Primary source
    VGNC:VGNC:77710
    See related
    Ensembl:ENSMMUG00000007694
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SNX16 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 8 NC_041761.1 (82265698..82308715, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 8 NC_027900.1 (80060850..80103114, complement)

    Chromosome 8 - NC_041761.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106999833 Neighboring gene zinc finger AN1-type containing 1 Neighboring gene charged multivesicular body protein 4C Neighboring gene tropomyosin alpha-3 chain-like Neighboring gene RALY RNA binding protein like Neighboring gene microRNA mir-7198

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in early endosome to late endosome transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosome to lysosome transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein targeting to lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in early endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extrinsic component of endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in late endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sorting nexin-16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041761.1 Reference Mmul_10 Primary Assembly

      Range
      82265698..82308715 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015145621.2 → XP_015001107.1  sorting nexin-16 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QBX1, H9EVP3
      Related
      ENSMMUP00000045540.1, ENSMMUT00000057616.2
      Conserved Domains (2) summary
      cd07276
      Location:105 → 214
      PX_SNX16; The phosphoinositide binding Phox Homology domain of Sorting Nexin 16
      cl23720
      Location:222 → 275
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

    2. XM_015145622.2 → XP_015001108.1  sorting nexin-16 isoform X2

      UniProtKB/TrEMBL
      F7CEW2, H9EVP3
      Related
      ENSMMUP00000010108.3, ENSMMUT00000010774.4
      Conserved Domains (2) summary
      cd07276
      Location:76 → 185
      PX_SNX16; The phosphoinositide binding Phox Homology domain of Sorting Nexin 16
      cl23720
      Location:193 → 246
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
    Nucleotide Protein
    Heading Accession and Version

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