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    ATG2B autophagy related 2B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712467, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ATG2Bprovided by VGNC
    Official Full Name
    autophagy related 2Bprovided by VGNC
    Primary source
    VGNC:VGNC:84310
    See related
    Ensembl:ENSMMUG00000003658
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ATG2B in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    43
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (158470292..158553870, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (158559511..158641662, complement)

    Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene bradykinin receptor B2 Neighboring gene bradykinin receptor B1 Neighboring gene small nucleolar RNA U13 Neighboring gene U2 spliceosomal RNA Neighboring gene GSK3B interacting protein Neighboring gene phosphatidylethanolamine-binding protein 1 pseudogene Neighboring gene adenylate kinase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol-3-phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in piecemeal microautophagy of the nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in reticulophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extrinsic component of membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in phagophore assembly site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    autophagy-related protein 2 homolog B
    Names
    ATG2 autophagy related 2 homolog B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041760.1 Reference Mmul_10 Primary Assembly

      Range
      158470292..158553870 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001101467.4 → XP_001101467.2  autophagy-related protein 2 homolog B isoform X1

      See identical proteins and their annotated locations for XP_001101467.2

      UniProtKB/TrEMBL
      F6PWS2, H9ZAM9
      Related
      ENSMMUP00000004879.4, ENSMMUT00000005180.4
      Conserved Domains (3) summary
      pfam09333
      Location:1980 → 2074
      ATG_C; Autophagy-related protein C terminal domain
      pfam12624
      Location:11 → 116
      Chorein_N; N-terminal region of Chorein or VPS13
      pfam13329
      Location:1240 → 1372
      ATG2_CAD; Autophagy-related protein 2 CAD motif

    2. XM_015144460.2 → XP_014999946.1  autophagy-related protein 2 homolog B isoform X2

      UniProtKB/TrEMBL
      H9ZAM9
      Conserved Domains (3) summary
      pfam09333
      Location:1979 → 2073
      ATG_C; Autophagy-related protein C terminal domain
      pfam12624
      Location:11 → 116
      Chorein_N; N-terminal region of Chorein or VPS13
      pfam13329
      Location:1239 → 1371
      ATG2_CAD; Autophagy-related protein 2 CAD motif

    3. XM_015144461.2 → XP_014999947.1  autophagy-related protein 2 homolog B isoform X3

      UniProtKB/TrEMBL
      F6PWT8, H9ZAM9
      Related
      ENSMMUP00000004877.4, ENSMMUT00000005178.4
      Conserved Domains (3) summary
      pfam09333
      Location:1980 → 2004
      ATG_C; Autophagy-related protein C terminal domain
      pfam12624
      Location:11 → 116
      Chorein_N; N-terminal region of Chorein or VPS13
      pfam13329
      Location:1240 → 1372
      ATG2_CAD; Autophagy-related protein 2 CAD motif

    RNA

    1. XR_001446441.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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