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    SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709158, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SMARCC2provided by VGNC
    Official Full Name
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2provided by VGNC
    Primary source
    VGNC:VGNC:77652
    See related
    Ensembl:ENSMMUG00000008273
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SMARCC2 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (55724017..55751384, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (54912311..54939692, complement)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene myosin light chain 6B Neighboring gene myosin light chain 6 Neighboring gene transfer RNA serine (anticodon CGA) Neighboring gene ring finger protein 41 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosomal DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nBAF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of npBAF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF complex subunit SMARCC2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      55724017..55751384 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015151976.2 → XP_015007462.1  SWI/SNF complex subunit SMARCC2 isoform X7

      UniProtKB/TrEMBL
      H9F1T3, H9FYS2
      Conserved Domains (5) summary
      PTZ00121
      Location:721 → 978
      PTZ00121; MAEBL; Provisional
      COG5259
      Location:379 → 739
      RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
      pfam16495
      Location:911 → 977
      SWIRM-assoc_1; SWIRM-associated region 1
      pfam16496
      Location:7 → 420
      SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
      pfam16498
      Location:715 → 779
      SWIRM-assoc_3; SWIRM-associated domain at the C-terminal

    2. XM_015151974.2 → XP_015007460.1  SWI/SNF complex subunit SMARCC2 isoform X5

      UniProtKB/TrEMBL
      H9F1T3, I2CXI3
      Related
      ENSMMUP00000041395.1, ENSMMUT00000060069.2
      Conserved Domains (6) summary
      PTZ00121
      Location:721 → 978
      PTZ00121; MAEBL; Provisional
      COG5259
      Location:379 → 739
      RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
      PRK07003
      Location:1006 → 1141
      PRK07003; DNA polymerase III subunit gamma/tau
      pfam16495
      Location:911 → 977
      SWIRM-assoc_1; SWIRM-associated region 1
      pfam16496
      Location:7 → 420
      SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
      pfam16498
      Location:715 → 779
      SWIRM-assoc_3; SWIRM-associated domain at the C-terminal

    3. XM_015151972.2 → XP_015007458.1  SWI/SNF complex subunit SMARCC2 isoform X3

      UniProtKB/TrEMBL
      H9EYV8, H9YVZ0
      Related
      ENSMMUP00000044051.1, ENSMMUT00000063299.2
      Conserved Domains (6) summary
      PTZ00121
      Location:690 → 947
      PTZ00121; MAEBL; Provisional
      PHA03247
      Location:968 → 1203
      PHA03247; large tegument protein UL36; Provisional
      COG5259
      Location:379 → 708
      RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
      pfam16495
      Location:880 → 946
      SWIRM-assoc_1; SWIRM-associated region 1
      pfam16496
      Location:7 → 420
      SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
      pfam16498
      Location:684 → 748
      SWIRM-assoc_3; SWIRM-associated domain at the C-terminal

    4. XM_028829605.1 → XP_028685438.1  SWI/SNF complex subunit SMARCC2 isoform X8

      UniProtKB/TrEMBL
      H9F1T3, H9FYS1
      Conserved Domains (5) summary
      PTZ00121
      Location:690 → 947
      PTZ00121; MAEBL; Provisional
      COG5259
      Location:379 → 708
      RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
      pfam16496
      Location:4 → 420
      SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
      pfam16498
      Location:684 → 748
      SWIRM-assoc_3; SWIRM-associated domain at the C-terminal
      pfam16495
      Location:880 → 946
      SWIRM-assoc_1; SWIRM-associated region 1

    5. XM_015151975.2 → XP_015007461.1  SWI/SNF complex subunit SMARCC2 isoform X6

      UniProtKB/TrEMBL
      H9F1T3
      Conserved Domains (6) summary
      PTZ00121
      Location:720 → 977
      PTZ00121; MAEBL; Provisional
      COG5259
      Location:379 → 738
      RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
      PRK07003
      Location:1005 → 1140
      PRK07003; DNA polymerase III subunit gamma/tau
      pfam16495
      Location:910 → 976
      SWIRM-assoc_1; SWIRM-associated region 1
      pfam16496
      Location:7 → 420
      SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
      pfam16498
      Location:714 → 778
      SWIRM-assoc_3; SWIRM-associated domain at the C-terminal

    6. XM_015151969.2 → XP_015007455.1  SWI/SNF complex subunit SMARCC2 isoform X1

      UniProtKB/TrEMBL
      H9EYV8, I0FUE7
      Conserved Domains (6) summary
      PTZ00121
      Location:721 → 978
      PTZ00121; MAEBL; Provisional
      PHA03247
      Location:999 → 1234
      PHA03247; large tegument protein UL36; Provisional
      COG5259
      Location:379 → 739
      RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
      pfam16495
      Location:911 → 977
      SWIRM-assoc_1; SWIRM-associated region 1
      pfam16496
      Location:7 → 420
      SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
      pfam16498
      Location:715 → 779
      SWIRM-assoc_3; SWIRM-associated domain at the C-terminal

    7. XM_015151973.2 → XP_015007459.1  SWI/SNF complex subunit SMARCC2 isoform X4

      UniProtKB/TrEMBL
      H9EYV8
      Conserved Domains (6) summary
      PTZ00121
      Location:689 → 946
      PTZ00121; MAEBL; Provisional
      PHA03247
      Location:967 → 1202
      PHA03247; large tegument protein UL36; Provisional
      COG5259
      Location:379 → 707
      RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
      pfam16495
      Location:879 → 945
      SWIRM-assoc_1; SWIRM-associated region 1
      pfam16496
      Location:7 → 420
      SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
      pfam16498
      Location:683 → 747
      SWIRM-assoc_3; SWIRM-associated domain at the C-terminal

    8. XM_015151970.2 → XP_015007456.1  SWI/SNF complex subunit SMARCC2 isoform X2

      UniProtKB/TrEMBL
      A0A1D5RIN8, H9EYV8
      Related
      ENSMMUP00000060182.2, ENSMMUT00000056048.2
      Conserved Domains (6) summary
      PTZ00121
      Location:720 → 977
      PTZ00121; MAEBL; Provisional
      PHA03247
      Location:998 → 1233
      PHA03247; large tegument protein UL36; Provisional
      COG5259
      Location:379 → 738
      RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
      pfam16495
      Location:910 → 976
      SWIRM-assoc_1; SWIRM-associated region 1
      pfam16496
      Location:7 → 420
      SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
      pfam16498
      Location:714 → 778
      SWIRM-assoc_3; SWIRM-associated domain at the C-terminal

    9. XM_028829606.1 → XP_028685439.1  SWI/SNF complex subunit SMARCC2 isoform X9

      Conserved Domains (6) summary
      PTZ00121
      Location:470 → 727
      PTZ00121; MAEBL; Provisional
      PHA03247
      Location:748 → 983
      PHA03247; large tegument protein UL36; Provisional
      COG5259
      Location:128 → 488
      RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
      pfam16495
      Location:660 → 726
      SWIRM-assoc_1; SWIRM-associated region 1
      pfam16496
      Location:1 → 169
      SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
      pfam16498
      Location:464 → 528
      SWIRM-assoc_3; SWIRM-associated domain at the C-terminal
    Nucleotide Protein
    Heading Accession and Version

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