SWI/SNF complex subunit SMARCC2 isoform X4 [Macaca mulatta]
SWI/SNF complex subunit SWI3( domain architecture ID 13873234)
SWI/SNF complex subunit SWI3 is required for the assembly and functional integrity of the SWI/SNF complex
List of domain hits
Name | Accession | Description | Interval | E-value | |||||||
SWIRM-assoc_2 | pfam16496 | SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex ... |
4-420 | 0e+00 | |||||||
SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known. : Pssm-ID: 465143 Cd Length: 412 Bit Score: 764.58 E-value: 0e+00
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RSC8 super family | cl34960 | RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / ... |
379-707 | 1.98e-81 | |||||||
RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]; The actual alignment was detected with superfamily member COG5259: Pssm-ID: 227584 [Multi-domain] Cd Length: 531 Bit Score: 277.15 E-value: 1.98e-81
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SWIRM-assoc_3 | pfam16498 | SWIRM-associated domain at the C-terminal; Much of the higher eukaryote SWI/SNF complex ... |
683-749 | 2.80e-34 | |||||||
SWIRM-associated domain at the C-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known. : Pssm-ID: 465145 [Multi-domain] Cd Length: 67 Bit Score: 125.54 E-value: 2.80e-34
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SWIRM-assoc_1 | pfam16495 | SWIRM-associated region 1; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 ... |
879-945 | 3.95e-32 | |||||||
SWIRM-associated region 1; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known. : Pssm-ID: 465142 [Multi-domain] Cd Length: 84 Bit Score: 119.93 E-value: 3.95e-32
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PTZ00121 super family | cl31754 | MAEBL; Provisional |
689-946 | 4.97e-08 | |||||||
MAEBL; Provisional The actual alignment was detected with superfamily member PTZ00121: Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 4.97e-08
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PHA03247 super family | cl33720 | large tegument protein UL36; Provisional |
967-1202 | 6.48e-05 | |||||||
large tegument protein UL36; Provisional The actual alignment was detected with superfamily member PHA03247: Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.63 E-value: 6.48e-05
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Name | Accession | Description | Interval | E-value | |||||||
SWIRM-assoc_2 | pfam16496 | SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex ... |
4-420 | 0e+00 | |||||||
SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known. Pssm-ID: 465143 Cd Length: 412 Bit Score: 764.58 E-value: 0e+00
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RSC8 | COG5259 | RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / ... |
379-707 | 1.98e-81 | |||||||
RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]; Pssm-ID: 227584 [Multi-domain] Cd Length: 531 Bit Score: 277.15 E-value: 1.98e-81
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SWIRM | pfam04433 | SWIRM domain; This SWIRM domain is a small alpha-helical domain of about 85 amino acid ... |
433-512 | 7.79e-37 | |||||||
SWIRM domain; This SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in chromosomal proteins. It contains a helix-turn helix motif and binds to DNA. Pssm-ID: 461307 [Multi-domain] Cd Length: 78 Bit Score: 133.07 E-value: 7.79e-37
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SWIRM-assoc_3 | pfam16498 | SWIRM-associated domain at the C-terminal; Much of the higher eukaryote SWI/SNF complex ... |
683-749 | 2.80e-34 | |||||||
SWIRM-associated domain at the C-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known. Pssm-ID: 465145 [Multi-domain] Cd Length: 67 Bit Score: 125.54 E-value: 2.80e-34
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SWIRM-assoc_1 | pfam16495 | SWIRM-associated region 1; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 ... |
879-945 | 3.95e-32 | |||||||
SWIRM-associated region 1; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known. Pssm-ID: 465142 [Multi-domain] Cd Length: 84 Bit Score: 119.93 E-value: 3.95e-32
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PTZ00121 | PTZ00121 | MAEBL; Provisional |
689-946 | 4.97e-08 | |||||||
MAEBL; Provisional Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 4.97e-08
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Caldesmon | pfam02029 | Caldesmon; |
716-946 | 7.17e-08 | |||||||
Caldesmon; Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 56.41 E-value: 7.17e-08
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CHROMO | smart00298 | Chromatin organization modifier domain; |
187-222 | 1.44e-05 | |||||||
Chromatin organization modifier domain; Pssm-ID: 214605 [Multi-domain] Cd Length: 55 Bit Score: 43.36 E-value: 1.44e-05
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
967-1202 | 6.48e-05 | |||||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.63 E-value: 6.48e-05
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2A1904 | TIGR00927 | K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
695-851 | 6.14e-04 | |||||||
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds] Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 44.22 E-value: 6.14e-04
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DUF5585 | pfam17823 | Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
973-1202 | 4.38e-03 | |||||||
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 41.10 E-value: 4.38e-03
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Name | Accession | Description | Interval | E-value | |||||||
SWIRM-assoc_2 | pfam16496 | SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex ... |
4-420 | 0e+00 | |||||||
SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known. Pssm-ID: 465143 Cd Length: 412 Bit Score: 764.58 E-value: 0e+00
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RSC8 | COG5259 | RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / ... |
379-707 | 1.98e-81 | |||||||
RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]; Pssm-ID: 227584 [Multi-domain] Cd Length: 531 Bit Score: 277.15 E-value: 1.98e-81
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SWIRM | pfam04433 | SWIRM domain; This SWIRM domain is a small alpha-helical domain of about 85 amino acid ... |
433-512 | 7.79e-37 | |||||||
SWIRM domain; This SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in chromosomal proteins. It contains a helix-turn helix motif and binds to DNA. Pssm-ID: 461307 [Multi-domain] Cd Length: 78 Bit Score: 133.07 E-value: 7.79e-37
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SWIRM-assoc_3 | pfam16498 | SWIRM-associated domain at the C-terminal; Much of the higher eukaryote SWI/SNF complex ... |
683-749 | 2.80e-34 | |||||||
SWIRM-associated domain at the C-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known. Pssm-ID: 465145 [Multi-domain] Cd Length: 67 Bit Score: 125.54 E-value: 2.80e-34
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SWIRM-assoc_1 | pfam16495 | SWIRM-associated region 1; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 ... |
879-945 | 3.95e-32 | |||||||
SWIRM-associated region 1; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known. Pssm-ID: 465142 [Multi-domain] Cd Length: 84 Bit Score: 119.93 E-value: 3.95e-32
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PTZ00121 | PTZ00121 | MAEBL; Provisional |
689-946 | 4.97e-08 | |||||||
MAEBL; Provisional Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 4.97e-08
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Caldesmon | pfam02029 | Caldesmon; |
716-946 | 7.17e-08 | |||||||
Caldesmon; Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 56.41 E-value: 7.17e-08
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PTZ00121 | PTZ00121 | MAEBL; Provisional |
687-946 | 9.44e-06 | |||||||
MAEBL; Provisional Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 9.44e-06
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CHROMO | smart00298 | Chromatin organization modifier domain; |
187-222 | 1.44e-05 | |||||||
Chromatin organization modifier domain; Pssm-ID: 214605 [Multi-domain] Cd Length: 55 Bit Score: 43.36 E-value: 1.44e-05
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PTZ00121 | PTZ00121 | MAEBL; Provisional |
684-849 | 2.41e-05 | |||||||
MAEBL; Provisional Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 2.41e-05
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PTZ00121 | PTZ00121 | MAEBL; Provisional |
693-852 | 4.31e-05 | |||||||
MAEBL; Provisional Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 4.31e-05
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
967-1202 | 6.48e-05 | |||||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.63 E-value: 6.48e-05
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PTZ00121 | PTZ00121 | MAEBL; Provisional |
690-942 | 1.03e-04 | |||||||
MAEBL; Provisional Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 1.03e-04
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Myb_DNA-binding | pfam00249 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
614-641 | 5.75e-04 | |||||||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 38.64 E-value: 5.75e-04
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2A1904 | TIGR00927 | K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
695-851 | 6.14e-04 | |||||||
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds] Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 44.22 E-value: 6.14e-04
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2A1904 | TIGR00927 | K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
713-931 | 1.89e-03 | |||||||
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds] Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 42.68 E-value: 1.89e-03
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PRK13108 | PRK13108 | prolipoprotein diacylglyceryl transferase; Reviewed |
670-849 | 1.91e-03 | |||||||
prolipoprotein diacylglyceryl transferase; Reviewed Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 42.27 E-value: 1.91e-03
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DUF5585 | pfam17823 | Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
973-1202 | 4.38e-03 | |||||||
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 41.10 E-value: 4.38e-03
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
970-1201 | 5.72e-03 | |||||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.08 E-value: 5.72e-03
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
969-1201 | 6.32e-03 | |||||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.08 E-value: 6.32e-03
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CAF-1_p150 | pfam11600 | Chromatin assembly factor 1 complex p150 subunit, N-terminal; CAF-1_p150 is a polypeptide ... |
748-851 | 7.47e-03 | |||||||
Chromatin assembly factor 1 complex p150 subunit, N-terminal; CAF-1_p150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesized and acetylated histones H3/H4 into chromatin during DNA replication and repair. CAF-1_p150 includes the HP1 interaction site, the PEST, KER and ED interacting sites. CAF-1_p150 interacts directly with newly synthesized and acetylated histones through the acidic KER and ED domains. The PEST domain is associated with proteins that undergo rapid proteolysis. Pssm-ID: 402959 [Multi-domain] Cd Length: 164 Bit Score: 38.52 E-value: 7.47e-03
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PHA03169 | PHA03169 | hypothetical protein; Provisional |
737-855 | 7.69e-03 | |||||||
hypothetical protein; Provisional Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 40.34 E-value: 7.69e-03
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PHA03169 | PHA03169 | hypothetical protein; Provisional |
686-831 | 9.54e-03 | |||||||
hypothetical protein; Provisional Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 39.95 E-value: 9.54e-03
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SMC_N | pfam02463 | RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
742-932 | 9.69e-03 | |||||||
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.34 E-value: 9.69e-03
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Blast search parameters | ||||
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