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Conserved domains on  [gi|966972882|ref|XP_015007459|]
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SWI/SNF complex subunit SMARCC2 isoform X4 [Macaca mulatta]

Protein Classification

SWI/SNF complex subunit SWI3( domain architecture ID 13873234)

SWI/SNF complex subunit SWI3 is required for the assembly and functional integrity of the SWI/SNF complex

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SWIRM-assoc_2 pfam16496
SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex ...
4-420 0e+00

SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


:

Pssm-ID: 465143  Cd Length: 412  Bit Score: 764.58  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882     4 RKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQEEVFGKHVSNAPLTKLPIKCFLD 83
Cdd:pfam16496    1 RKKDGGPNVKFFESPETLAQLESVRQWLGKNYKKYVQADPPTNKSLATLVVQLLQFQEDAFGKNVSKPPLTRLPMKCFLD 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882    84 FKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRNVEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRH 163
Cdd:pfam16496   81 FKPGGGLCHILATAYKFKSEQGWRRFDFQNPSRMDRNVEMFMNIEKALVQNNCLTRPVIYIRPDVDKKLASKLKDIIKRH 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   164 QGTVTEDKNNASHVVYPVPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKIHAKWIL 243
Cdd:pfam16496  161 QGTITEDEEDATHIVYPPPPDPEEEEWARPVMKRDKQVLVHWYYFPDSYDTWVPSSDVDLPVDDPPTPEKPWRVHAKWLL 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   244 DTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKtltDEVNSPDSDRRDKKGGNYKKRKRSPSPSPTPEAKKKNAKKGPstP 323
Cdd:pfam16496  241 DLDQYNEWMNEEDYEVDENGKKKSHRQRISVE---DEMSSPDPDRKDKKSSPGKKRKRSPSPPPTPVGKKKSGRKGS--P 315
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   324 YTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKTVNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNK 403
Cdd:pfam16496  316 ARRKKRRREEEEEEDLTKDMEDPTPVPNIEEVNLPKNVNSKKDSENQPVKGGTMTDLDEQEDDKVESGGKEDEEGGKTSK 395
                          410
                   ....*....|....*..
gi 966972882   404 GEQTKNPDLHEDNVTEQ 420
Cdd:pfam16496  396 GEGSRLSDEHEDNVTEQ 412
RSC8 super family cl34960
RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / ...
379-707 1.98e-81

RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription];


The actual alignment was detected with superfamily member COG5259:

Pssm-ID: 227584 [Multi-domain]  Cd Length: 531  Bit Score: 277.15  E-value: 1.98e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  379 DLDEQEDESMETTGkdeDENSTGNKGEQTKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKT 458
Cdd:COG5259    10 DSGEERNEQSAEIM---DHSKSANEKKTTILRVEAETFLMEQTHPIIIPSYAEWFDGSKIHEIEKRSNPEFFNGRSPSKT 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  459 PEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTP 538
Cdd:COG5259    87 PEVYKDYRNFMINSYRLNPNEYLTVTACRRNVAGDVAAIVRVHRFLEKWGLINYQVDPGTRPSTIGPPLTSHFQDLHDTP 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  539 SGLVPLQPKTP-------QTSASQQM---------LNFPDK-GKEKPTDMQ-----------------NFG----LRTDM 580
Cdd:COG5259   167 RGLSPFLPWGPinqrvlgAKEIEYEThkeenyspsLKSPKKeSQGKVDELKdhsekhpsscsccgnksFNTryhnLRAEK 246
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  581 YT------KKNV-PSKS------KAAASATRE---WTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIE 644
Cdd:COG5259   247 YNscsecyDQGRfPSEFtssdfkPVTISLLIRdknWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIE 326
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966972882  645 DPYLEDSEASlGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAS----AAAKSALEEFSKMKEEVP 707
Cdd:COG5259   327 DNYLSKGDGK-GDNSKGRLPFDGSENPVLSTISFLAGIVNPRVQSekqrAIIKSGKISHINRESQEH 392
SWIRM-assoc_3 pfam16498
SWIRM-associated domain at the C-terminal; Much of the higher eukaryote SWI/SNF complex ...
683-749 2.80e-34

SWIRM-associated domain at the C-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


:

Pssm-ID: 465145 [Multi-domain]  Cd Length: 67  Bit Score: 125.54  E-value: 2.80e-34
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966972882   683 VDPRVASAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPER 749
Cdd:pfam16498    1 VDPRVAAAAAKAAMEEFSKIKEEVPPALVEAHVKNVEEAAKKGGKVDPAFGLEKSGIAGTDPEEPEK 67
SWIRM-assoc_1 pfam16495
SWIRM-associated region 1; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 ...
879-945 3.95e-32

SWIRM-associated region 1; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


:

Pssm-ID: 465142 [Multi-domain]  Cd Length: 84  Bit Score: 119.93  E-value: 3.95e-32
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966972882   879 EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRA 945
Cdd:pfam16495   18 EEREIQRLVALLVETQLKKLELKLKQFEELEKLLERERRQLERQRQQLFLERLAFKKQRLEVAEKLA 84
PTZ00121 super family cl31754
MAEBL; Provisional
689-946 4.97e-08

MAEBL; Provisional


The actual alignment was detected with superfamily member PTZ00121:

Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 57.84  E-value: 4.97e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  689 SAAAKSALEEFSKMKEEVPTAlVEA-----HVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPERIEESGNDEARVEGQ 763
Cdd:PTZ00121 1413 AAAAKKKADEAKKKAEEKKKA-DEAkkkaeEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  764 ATDEKKEPKEPREgggaiEEEAKEKTSEApKKDEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQ--EEVLKEVVESE 841
Cdd:PTZ00121 1492 AEEAKKKADEAKK-----AAEAKKKADEA-KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKkaEELKKAEEKKK 1565
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  842 GERKTKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEiKLRHFEELETIMDREREALEY 921
Cdd:PTZ00121 1566 AEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE-ELKKAEEEKKKVEQLKKKEAE 1644
                         250       260
                  ....*....|....*....|....*
gi 966972882  922 QRQQLLADRQAFHMEQLKYAEMRAR 946
Cdd:PTZ00121 1645 EKKKAEELKKAEEENKIKAAEEAKK 1669
PHA03247 super family cl33720
large tegument protein UL36; Provisional
967-1202 6.48e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 6.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  967 GSQPIPPTGAAGPPAVHGLAVAPASvvPAPAGSGAPPGslgpseqiGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHG 1046
Cdd:PHA03247 2606 GDPRGPAPPSPLPPDTHAPDPPPPS--PSPAANEPDPH--------PPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQ 2675
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882 1047 PSPFPNQQTPPSMMP--GAVPGSGHPGVAGNAPLGLPFGMPPPPPPPAPSIIPFGSLADSISINLPPPPNlhghhhHLPF 1124
Cdd:PHA03247 2676 ASSPPQRPRRRAARPtvGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVP------AGPA 2749
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882 1125 APGTLPPPNLPVSMANPLHPNLPA--------TTTMPSSLPLGPGLGSA-----AAQSPAIVAAVQGNLLPSASP---LP 1188
Cdd:PHA03247 2750 TPGGPARPARPPTTAGPPAPAPPAapaagpprRLTRPAVASLSESRESLpspwdPADPPAAVLAPAAALPPAASPagpLP 2829
                         250
                  ....*....|....
gi 966972882 1189 DPGTPLPPDPTAPS 1202
Cdd:PHA03247 2830 PPTSAQPTAPPPPP 2843
 
Name Accession Description Interval E-value
SWIRM-assoc_2 pfam16496
SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex ...
4-420 0e+00

SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


Pssm-ID: 465143  Cd Length: 412  Bit Score: 764.58  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882     4 RKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQEEVFGKHVSNAPLTKLPIKCFLD 83
Cdd:pfam16496    1 RKKDGGPNVKFFESPETLAQLESVRQWLGKNYKKYVQADPPTNKSLATLVVQLLQFQEDAFGKNVSKPPLTRLPMKCFLD 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882    84 FKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRNVEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRH 163
Cdd:pfam16496   81 FKPGGGLCHILATAYKFKSEQGWRRFDFQNPSRMDRNVEMFMNIEKALVQNNCLTRPVIYIRPDVDKKLASKLKDIIKRH 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   164 QGTVTEDKNNASHVVYPVPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKIHAKWIL 243
Cdd:pfam16496  161 QGTITEDEEDATHIVYPPPPDPEEEEWARPVMKRDKQVLVHWYYFPDSYDTWVPSSDVDLPVDDPPTPEKPWRVHAKWLL 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   244 DTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKtltDEVNSPDSDRRDKKGGNYKKRKRSPSPSPTPEAKKKNAKKGPstP 323
Cdd:pfam16496  241 DLDQYNEWMNEEDYEVDENGKKKSHRQRISVE---DEMSSPDPDRKDKKSSPGKKRKRSPSPPPTPVGKKKSGRKGS--P 315
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   324 YTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKTVNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNK 403
Cdd:pfam16496  316 ARRKKRRREEEEEEDLTKDMEDPTPVPNIEEVNLPKNVNSKKDSENQPVKGGTMTDLDEQEDDKVESGGKEDEEGGKTSK 395
                          410
                   ....*....|....*..
gi 966972882   404 GEQTKNPDLHEDNVTEQ 420
Cdd:pfam16496  396 GEGSRLSDEHEDNVTEQ 412
RSC8 COG5259
RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / ...
379-707 1.98e-81

RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription];


Pssm-ID: 227584 [Multi-domain]  Cd Length: 531  Bit Score: 277.15  E-value: 1.98e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  379 DLDEQEDESMETTGkdeDENSTGNKGEQTKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKT 458
Cdd:COG5259    10 DSGEERNEQSAEIM---DHSKSANEKKTTILRVEAETFLMEQTHPIIIPSYAEWFDGSKIHEIEKRSNPEFFNGRSPSKT 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  459 PEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTP 538
Cdd:COG5259    87 PEVYKDYRNFMINSYRLNPNEYLTVTACRRNVAGDVAAIVRVHRFLEKWGLINYQVDPGTRPSTIGPPLTSHFQDLHDTP 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  539 SGLVPLQPKTP-------QTSASQQM---------LNFPDK-GKEKPTDMQ-----------------NFG----LRTDM 580
Cdd:COG5259   167 RGLSPFLPWGPinqrvlgAKEIEYEThkeenyspsLKSPKKeSQGKVDELKdhsekhpsscsccgnksFNTryhnLRAEK 246
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  581 YT------KKNV-PSKS------KAAASATRE---WTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIE 644
Cdd:COG5259   247 YNscsecyDQGRfPSEFtssdfkPVTISLLIRdknWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIE 326
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966972882  645 DPYLEDSEASlGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAS----AAAKSALEEFSKMKEEVP 707
Cdd:COG5259   327 DNYLSKGDGK-GDNSKGRLPFDGSENPVLSTISFLAGIVNPRVQSekqrAIIKSGKISHINRESQEH 392
SWIRM pfam04433
SWIRM domain; This SWIRM domain is a small alpha-helical domain of about 85 amino acid ...
433-512 7.79e-37

SWIRM domain; This SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in chromosomal proteins. It contains a helix-turn helix motif and binds to DNA.


Pssm-ID: 461307 [Multi-domain]  Cd Length: 78  Bit Score: 133.07  E-value: 7.79e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   433 FDYNSVHAIERRALPEFFNGKnkSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINY 512
Cdd:pfam04433    1 SDPDKLHPIEKRLLPEFFNGK--SKTPEVYLEIRNFILNLWRENPKEYLTKTDARRALKGDVNLISRIHEFLERWGLINF 78
SWIRM-assoc_3 pfam16498
SWIRM-associated domain at the C-terminal; Much of the higher eukaryote SWI/SNF complex ...
683-749 2.80e-34

SWIRM-associated domain at the C-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


Pssm-ID: 465145 [Multi-domain]  Cd Length: 67  Bit Score: 125.54  E-value: 2.80e-34
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966972882   683 VDPRVASAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPER 749
Cdd:pfam16498    1 VDPRVAAAAAKAAMEEFSKIKEEVPPALVEAHVKNVEEAAKKGGKVDPAFGLEKSGIAGTDPEEPEK 67
SWIRM-assoc_1 pfam16495
SWIRM-associated region 1; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 ...
879-945 3.95e-32

SWIRM-associated region 1; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


Pssm-ID: 465142 [Multi-domain]  Cd Length: 84  Bit Score: 119.93  E-value: 3.95e-32
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966972882   879 EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRA 945
Cdd:pfam16495   18 EEREIQRLVALLVETQLKKLELKLKQFEELEKLLERERRQLERQRQQLFLERLAFKKQRLEVAEKLA 84
PTZ00121 PTZ00121
MAEBL; Provisional
689-946 4.97e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 57.84  E-value: 4.97e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  689 SAAAKSALEEFSKMKEEVPTAlVEA-----HVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPERIEESGNDEARVEGQ 763
Cdd:PTZ00121 1413 AAAAKKKADEAKKKAEEKKKA-DEAkkkaeEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  764 ATDEKKEPKEPREgggaiEEEAKEKTSEApKKDEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQ--EEVLKEVVESE 841
Cdd:PTZ00121 1492 AEEAKKKADEAKK-----AAEAKKKADEA-KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKkaEELKKAEEKKK 1565
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  842 GERKTKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEiKLRHFEELETIMDREREALEY 921
Cdd:PTZ00121 1566 AEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE-ELKKAEEEKKKVEQLKKKEAE 1644
                         250       260
                  ....*....|....*....|....*
gi 966972882  922 QRQQLLADRQAFHMEQLKYAEMRAR 946
Cdd:PTZ00121 1645 EKKKAEELKKAEEENKIKAAEEAKK 1669
Caldesmon pfam02029
Caldesmon;
716-946 7.17e-08

Caldesmon;


Pssm-ID: 460421 [Multi-domain]  Cd Length: 495  Bit Score: 56.41  E-value: 7.17e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   716 RKVEEAAKVTGKADPAFGLESSGIAgttsDEPERIEESGNDEARVEGQATDEKKEPKEprEGGGAIEEEAKE-KTSEAPK 794
Cdd:pfam02029   77 KRLQEALERQKEFDPTIADEKESVA----ERKENNEEEENSSWEKEEKRDSRLGRYKE--EETEIREKEYQEnKWSTEVR 150
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   795 KDEEKG-KEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAAAVKAK 873
Cdd:pfam02029  151 QAEEEGeEEEDKSEEAEEVPTENFAKEEVKDEKIKKEKKVKYESKVFLDQKRGHPEVKSQNGEEEVTKLKVTTKRRQGGL 230
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   874 HLAAVEERKIKSLVallvETQMKKLEIKLRH---------------------FEELETIMDREREALEYQRQQllaDRQA 932
Cdd:pfam02029  231 SQSQEREEEAEVFL----EAEQKLEELRRRRqekeseefeklrqkqqeaeleLEELKKKREERRKLLEEEEQR---RKQE 303
                          250
                   ....*....|....
gi 966972882   933 FHMEQLKYAEMRAR 946
Cdd:pfam02029  304 EAERKLREEEEKRR 317
CHROMO smart00298
Chromatin organization modifier domain;
187-222 1.44e-05

Chromatin organization modifier domain;


Pssm-ID: 214605 [Multi-domain]  Cd Length: 55  Bit Score: 43.36  E-value: 1.44e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 966972882    187 EEEWVRPVMKR-----DKQVLLHWGYYPDSYDTWIPASEIE 222
Cdd:smart00298    1 EYEVEKILDHRwkkkgELEYLVKWKGYSYSEDTWEPEENLL 41
PHA03247 PHA03247
large tegument protein UL36; Provisional
967-1202 6.48e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 6.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  967 GSQPIPPTGAAGPPAVHGLAVAPASvvPAPAGSGAPPGslgpseqiGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHG 1046
Cdd:PHA03247 2606 GDPRGPAPPSPLPPDTHAPDPPPPS--PSPAANEPDPH--------PPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQ 2675
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882 1047 PSPFPNQQTPPSMMP--GAVPGSGHPGVAGNAPLGLPFGMPPPPPPPAPSIIPFGSLADSISINLPPPPNlhghhhHLPF 1124
Cdd:PHA03247 2676 ASSPPQRPRRRAARPtvGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVP------AGPA 2749
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882 1125 APGTLPPPNLPVSMANPLHPNLPA--------TTTMPSSLPLGPGLGSA-----AAQSPAIVAAVQGNLLPSASP---LP 1188
Cdd:PHA03247 2750 TPGGPARPARPPTTAGPPAPAPPAapaagpprRLTRPAVASLSESRESLpspwdPADPPAAVLAPAAALPPAASPagpLP 2829
                         250
                  ....*....|....
gi 966972882 1189 DPGTPLPPDPTAPS 1202
Cdd:PHA03247 2830 PPTSAQPTAPPPPP 2843
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
695-851 6.14e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 44.22  E-value: 6.14e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   695 ALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGK--------ADPAFGLESSGIAGTTSDEPERIEESGNDEARVEGQATD 766
Cdd:TIGR00927  626 ALGDLSKGDVAEAEHTGERTGEEGERPTEAEGEngeesggeAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEAD 705
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   767 EKKEPKEPR---EGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKEseksdGDPIVDPEKEKEPKEGQEEVLKEVVESEGE 843
Cdd:TIGR00927  706 HKGETEAEEvehEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAE-----GKHEVETEGDRKETEHEGETEAEGKEDEDE 780

                   ....*...
gi 966972882   844 RKTKVERD 851
Cdd:TIGR00927  781 GEIQAGED 788
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
973-1202 4.38e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 41.10  E-value: 4.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   973 PTGAAGPPAVHglAVAPASVVPAPagsgapPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPSPFPN 1052
Cdd:pfam17823  131 PAAIAALPSEA--FSAPRAAACRA------NASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSA 202
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  1053 QQT--PPSMMPGAVPGSGHPG---VAGNAPLGLPFGMPPPPPPPAPSIIPFGSLADSI--------SINLPPP----PNL 1115
Cdd:pfam17823  203 PATltPARGISTAATATGHPAagtALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAgtvasaagTINMGDPharrLSP 282
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  1116 HGHHHHLPFAPGTLPP-------PNLPVSMANPLHPNLPATTTMPSSLPLGPGL-GSAAAQSPAIVAAVQGNLL-PSASP 1186
Cdd:pfam17823  283 AKHMPSDTMARNPAAPmgaqaqgPIIQVSTDQPVHNTAGEPTPSPSNTTLEPNTpKSVASTNLAVVTTTKAQAKePSASP 362
                          250
                   ....*....|....*.
gi 966972882  1187 LPDPGTPLPPDPTAPS 1202
Cdd:pfam17823  363 VPVLHTSMIPEVEATS 378
 
Name Accession Description Interval E-value
SWIRM-assoc_2 pfam16496
SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex ...
4-420 0e+00

SWIRM-associated domain at the N-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


Pssm-ID: 465143  Cd Length: 412  Bit Score: 764.58  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882     4 RKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQEEVFGKHVSNAPLTKLPIKCFLD 83
Cdd:pfam16496    1 RKKDGGPNVKFFESPETLAQLESVRQWLGKNYKKYVQADPPTNKSLATLVVQLLQFQEDAFGKNVSKPPLTRLPMKCFLD 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882    84 FKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRNVEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRH 163
Cdd:pfam16496   81 FKPGGGLCHILATAYKFKSEQGWRRFDFQNPSRMDRNVEMFMNIEKALVQNNCLTRPVIYIRPDVDKKLASKLKDIIKRH 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   164 QGTVTEDKNNASHVVYPVPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKIHAKWIL 243
Cdd:pfam16496  161 QGTITEDEEDATHIVYPPPPDPEEEEWARPVMKRDKQVLVHWYYFPDSYDTWVPSSDVDLPVDDPPTPEKPWRVHAKWLL 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   244 DTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKtltDEVNSPDSDRRDKKGGNYKKRKRSPSPSPTPEAKKKNAKKGPstP 323
Cdd:pfam16496  241 DLDQYNEWMNEEDYEVDENGKKKSHRQRISVE---DEMSSPDPDRKDKKSSPGKKRKRSPSPPPTPVGKKKSGRKGS--P 315
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   324 YTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKTVNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNK 403
Cdd:pfam16496  316 ARRKKRRREEEEEEDLTKDMEDPTPVPNIEEVNLPKNVNSKKDSENQPVKGGTMTDLDEQEDDKVESGGKEDEEGGKTSK 395
                          410
                   ....*....|....*..
gi 966972882   404 GEQTKNPDLHEDNVTEQ 420
Cdd:pfam16496  396 GEGSRLSDEHEDNVTEQ 412
RSC8 COG5259
RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / ...
379-707 1.98e-81

RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription];


Pssm-ID: 227584 [Multi-domain]  Cd Length: 531  Bit Score: 277.15  E-value: 1.98e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  379 DLDEQEDESMETTGkdeDENSTGNKGEQTKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKT 458
Cdd:COG5259    10 DSGEERNEQSAEIM---DHSKSANEKKTTILRVEAETFLMEQTHPIIIPSYAEWFDGSKIHEIEKRSNPEFFNGRSPSKT 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  459 PEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTP 538
Cdd:COG5259    87 PEVYKDYRNFMINSYRLNPNEYLTVTACRRNVAGDVAAIVRVHRFLEKWGLINYQVDPGTRPSTIGPPLTSHFQDLHDTP 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  539 SGLVPLQPKTP-------QTSASQQM---------LNFPDK-GKEKPTDMQ-----------------NFG----LRTDM 580
Cdd:COG5259   167 RGLSPFLPWGPinqrvlgAKEIEYEThkeenyspsLKSPKKeSQGKVDELKdhsekhpsscsccgnksFNTryhnLRAEK 246
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  581 YT------KKNV-PSKS------KAAASATRE---WTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIE 644
Cdd:COG5259   247 YNscsecyDQGRfPSEFtssdfkPVTISLLIRdknWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIE 326
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966972882  645 DPYLEDSEASlGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAS----AAAKSALEEFSKMKEEVP 707
Cdd:COG5259   327 DNYLSKGDGK-GDNSKGRLPFDGSENPVLSTISFLAGIVNPRVQSekqrAIIKSGKISHINRESQEH 392
SWIRM pfam04433
SWIRM domain; This SWIRM domain is a small alpha-helical domain of about 85 amino acid ...
433-512 7.79e-37

SWIRM domain; This SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in chromosomal proteins. It contains a helix-turn helix motif and binds to DNA.


Pssm-ID: 461307 [Multi-domain]  Cd Length: 78  Bit Score: 133.07  E-value: 7.79e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   433 FDYNSVHAIERRALPEFFNGKnkSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINY 512
Cdd:pfam04433    1 SDPDKLHPIEKRLLPEFFNGK--SKTPEVYLEIRNFILNLWRENPKEYLTKTDARRALKGDVNLISRIHEFLERWGLINF 78
SWIRM-assoc_3 pfam16498
SWIRM-associated domain at the C-terminal; Much of the higher eukaryote SWI/SNF complex ...
683-749 2.80e-34

SWIRM-associated domain at the C-terminal; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


Pssm-ID: 465145 [Multi-domain]  Cd Length: 67  Bit Score: 125.54  E-value: 2.80e-34
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966972882   683 VDPRVASAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPER 749
Cdd:pfam16498    1 VDPRVAAAAAKAAMEEFSKIKEEVPPALVEAHVKNVEEAAKKGGKVDPAFGLEKSGIAGTDPEEPEK 67
SWIRM-assoc_1 pfam16495
SWIRM-associated region 1; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 ...
879-945 3.95e-32

SWIRM-associated region 1; Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.


Pssm-ID: 465142 [Multi-domain]  Cd Length: 84  Bit Score: 119.93  E-value: 3.95e-32
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966972882   879 EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRA 945
Cdd:pfam16495   18 EEREIQRLVALLVETQLKKLELKLKQFEELEKLLERERRQLERQRQQLFLERLAFKKQRLEVAEKLA 84
PTZ00121 PTZ00121
MAEBL; Provisional
689-946 4.97e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 57.84  E-value: 4.97e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  689 SAAAKSALEEFSKMKEEVPTAlVEA-----HVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPERIEESGNDEARVEGQ 763
Cdd:PTZ00121 1413 AAAAKKKADEAKKKAEEKKKA-DEAkkkaeEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  764 ATDEKKEPKEPREgggaiEEEAKEKTSEApKKDEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQ--EEVLKEVVESE 841
Cdd:PTZ00121 1492 AEEAKKKADEAKK-----AAEAKKKADEA-KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKkaEELKKAEEKKK 1565
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  842 GERKTKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEiKLRHFEELETIMDREREALEY 921
Cdd:PTZ00121 1566 AEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE-ELKKAEEEKKKVEQLKKKEAE 1644
                         250       260
                  ....*....|....*....|....*
gi 966972882  922 QRQQLLADRQAFHMEQLKYAEMRAR 946
Cdd:PTZ00121 1645 EKKKAEELKKAEEENKIKAAEEAKK 1669
Caldesmon pfam02029
Caldesmon;
716-946 7.17e-08

Caldesmon;


Pssm-ID: 460421 [Multi-domain]  Cd Length: 495  Bit Score: 56.41  E-value: 7.17e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   716 RKVEEAAKVTGKADPAFGLESSGIAgttsDEPERIEESGNDEARVEGQATDEKKEPKEprEGGGAIEEEAKE-KTSEAPK 794
Cdd:pfam02029   77 KRLQEALERQKEFDPTIADEKESVA----ERKENNEEEENSSWEKEEKRDSRLGRYKE--EETEIREKEYQEnKWSTEVR 150
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   795 KDEEKG-KEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAAAVKAK 873
Cdd:pfam02029  151 QAEEEGeEEEDKSEEAEEVPTENFAKEEVKDEKIKKEKKVKYESKVFLDQKRGHPEVKSQNGEEEVTKLKVTTKRRQGGL 230
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   874 HLAAVEERKIKSLVallvETQMKKLEIKLRH---------------------FEELETIMDREREALEYQRQQllaDRQA 932
Cdd:pfam02029  231 SQSQEREEEAEVFL----EAEQKLEELRRRRqekeseefeklrqkqqeaeleLEELKKKREERRKLLEEEEQR---RKQE 303
                          250
                   ....*....|....
gi 966972882   933 FHMEQLKYAEMRAR 946
Cdd:pfam02029  304 EAERKLREEEEKRR 317
PTZ00121 PTZ00121
MAEBL; Provisional
687-946 9.44e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.14  E-value: 9.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  687 VASAAAKSALEEFSKMKEEVPTALveahvRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPERIEEsgndeARVEGQATD 766
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNMAL-----RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE-----AKIKAEELK 1626
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  767 EKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVLKEvvesEGERKT 846
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK----EAEEAK 1702
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  847 KVERdigegnlstAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQL 926
Cdd:PTZ00121 1703 KAEE---------LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773
                         250       260
                  ....*....|....*....|
gi 966972882  927 LADRQAFHMEQLKYAEMRAR 946
Cdd:PTZ00121 1774 RKEKEAVIEEELDEEDEKRR 1793
CHROMO smart00298
Chromatin organization modifier domain;
187-222 1.44e-05

Chromatin organization modifier domain;


Pssm-ID: 214605 [Multi-domain]  Cd Length: 55  Bit Score: 43.36  E-value: 1.44e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 966972882    187 EEEWVRPVMKR-----DKQVLLHWGYYPDSYDTWIPASEIE 222
Cdd:smart00298    1 EYEVEKILDHRwkkkgELEYLVKWKGYSYSEDTWEPEENLL 41
PTZ00121 PTZ00121
MAEBL; Provisional
684-849 2.41e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.98  E-value: 2.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  684 DPRVASAAAKSalEEFSKMKEEVPTAlveAHVRKVEEAAKVTGKADPAFGLESSGIAGT---TSDEPERIEESGN-DEAR 759
Cdd:PTZ00121 1222 DAKKAEAVKKA--EEAKKDAEEAKKA---EEERNNEEIRKFEEARMAHFARRQAAIKAEearKADELKKAEEKKKaDEAK 1296
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  760 V--EGQATDE-KKEPKEPREGGGAIE--EEAKEKTSEAPKKDEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVL 834
Cdd:PTZ00121 1297 KaeEKKKADEaKKKAEEAKKADEAKKkaEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376
                         170
                  ....*....|....*...
gi 966972882  835 K---EVVESEGERKTKVE 849
Cdd:PTZ00121 1377 KkkaDAAKKKAEEKKKAD 1394
PTZ00121 PTZ00121
MAEBL; Provisional
693-852 4.31e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.21  E-value: 4.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  693 KSALEEFSKMKEEVPTALVEAHVRKVEEAAKV---TGKADPAFGLESSgiAGTTSDEPERIEESGNDEARVEGQATDEKK 769
Cdd:PTZ00121 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAeedKKKAEEAKKAEED--EKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  770 EPKEPREGggaiEEEAKEKTSEAPKKDEEKGKEGDS----EKESEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGE-R 844
Cdd:PTZ00121 1717 KAEELKKA----EEENKIKAEEAKKEAEEDKKKAEEakkdEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEkR 1792

                  ....*...
gi 966972882  845 KTKVERDI 852
Cdd:PTZ00121 1793 RMEVDKKI 1800
PHA03247 PHA03247
large tegument protein UL36; Provisional
967-1202 6.48e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 6.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  967 GSQPIPPTGAAGPPAVHGLAVAPASvvPAPAGSGAPPGslgpseqiGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHG 1046
Cdd:PHA03247 2606 GDPRGPAPPSPLPPDTHAPDPPPPS--PSPAANEPDPH--------PPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQ 2675
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882 1047 PSPFPNQQTPPSMMP--GAVPGSGHPGVAGNAPLGLPFGMPPPPPPPAPSIIPFGSLADSISINLPPPPNlhghhhHLPF 1124
Cdd:PHA03247 2676 ASSPPQRPRRRAARPtvGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVP------AGPA 2749
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882 1125 APGTLPPPNLPVSMANPLHPNLPA--------TTTMPSSLPLGPGLGSA-----AAQSPAIVAAVQGNLLPSASP---LP 1188
Cdd:PHA03247 2750 TPGGPARPARPPTTAGPPAPAPPAapaagpprRLTRPAVASLSESRESLpspwdPADPPAAVLAPAAALPPAASPagpLP 2829
                         250
                  ....*....|....
gi 966972882 1189 DPGTPLPPDPTAPS 1202
Cdd:PHA03247 2830 PPTSAQPTAPPPPP 2843
PTZ00121 PTZ00121
MAEBL; Provisional
690-942 1.03e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.06  E-value: 1.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  690 AAAKSALEEFSKMKEEVPTAlvEAHVRKVEEAAKvtgKADPAfglessgiaGTTSDEPERIEESGNDEARvegQATDEKK 769
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKA--DEAKKKAEEAKK---KADAA---------KKKAEEAKKAAEAAKAEAE---AAADEAE 1360
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  770 EPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKESE--KSDGDPIVDPEKEK----EPKEGQEEVLK-EVVESEG 842
Cdd:PTZ00121 1361 AAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEedKKKADELKKAAAAKkkadEAKKKAEEKKKaDEAKKKA 1440
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  843 ERKTKVERdigegnlstaaAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQ 922
Cdd:PTZ00121 1441 EEAKKADE-----------AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509
                         250       260
                  ....*....|....*....|..
gi 966972882  923 RQ--QLLADRQAFHMEQLKYAE 942
Cdd:PTZ00121 1510 KKadEAKKAEEAKKADEAKKAE 1531
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
614-641 5.75e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 38.64  E-value: 5.75e-04
                           10        20
                   ....*....|....*....|....*...
gi 966972882   614 MYKDDWNKVSEHVGSRTQDECILHFLRL 641
Cdd:pfam00249   18 KLGNRWKKIAKLLPGRTDNQCKNRWQNY 45
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
695-851 6.14e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 44.22  E-value: 6.14e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   695 ALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGK--------ADPAFGLESSGIAGTTSDEPERIEESGNDEARVEGQATD 766
Cdd:TIGR00927  626 ALGDLSKGDVAEAEHTGERTGEEGERPTEAEGEngeesggeAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEAD 705
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   767 EKKEPKEPR---EGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKEseksdGDPIVDPEKEKEPKEGQEEVLKEVVESEGE 843
Cdd:TIGR00927  706 HKGETEAEEvehEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAE-----GKHEVETEGDRKETEHEGETEAEGKEDEDE 780

                   ....*...
gi 966972882   844 RKTKVERD 851
Cdd:TIGR00927  781 GEIQAGED 788
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
713-931 1.89e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 42.68  E-value: 1.89e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   713 AHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPERIEESGNDEARVEGQATDEKKEPKE---PREGGGAIEEEAKEKT 789
Cdd:TIGR00927  622 AKVMALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEgeiPAERKGEQEGEGEIEA 701
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   790 SEAPKKDEEKGKEGDSEKESEkSDGDpivDPEKEKEPKEGQEEVLKEV---VESEGERKTKVERDIGEGNLSTAAAAALA 866
Cdd:TIGR00927  702 KEADHKGETEAEEVEHEGETE-AEGT---EDEGEIETGEEGEEVEDEGegeAEGKHEVETEGDRKETEHEGETEAEGKED 777
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966972882   867 AAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQ 931
Cdd:TIGR00927  778 EDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQ 842
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
670-849 1.91e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 42.27  E-value: 1.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  670 NPVMSTVAFLASVV------DPRVASAAAKSALEEFSKMKEEVPTALVEAhvrKVEEAAKVTGKADPafGLESSGIAGTT 743
Cdd:PRK13108  257 NSFTSTFVFIGAVVyiilapKGREAPGALRGSEYVVDEALEREPAELAAA---AVASAASAVGPVGP--GEPNQPDDVAE 331
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  744 SDEPERIEESGNDEARVEGQ----------ATDEKKEPKEPREGGGAIEEEAkektSEAPKKDEEKGKEGDSE---KESE 810
Cdd:PRK13108  332 AVKAEVAEVTDEVAAESVVQvadrdgestpAVEETSEADIEREQPGDLAGQA----PAAHQVDAEAASAAPEEpaaLASE 407
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 966972882  811 KSDGDPIVDPEKEkEPKEGQEEVLKEVVESEGERKTKVE 849
Cdd:PRK13108  408 AHDETEPEVPEKA-APIPDPAKPDELAVAGPGDDPAEPD 445
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
973-1202 4.38e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 41.10  E-value: 4.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   973 PTGAAGPPAVHglAVAPASVVPAPagsgapPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPSPFPN 1052
Cdd:pfam17823  131 PAAIAALPSEA--FSAPRAAACRA------NASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSA 202
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  1053 QQT--PPSMMPGAVPGSGHPG---VAGNAPLGLPFGMPPPPPPPAPSIIPFGSLADSI--------SINLPPP----PNL 1115
Cdd:pfam17823  203 PATltPARGISTAATATGHPAagtALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAgtvasaagTINMGDPharrLSP 282
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  1116 HGHHHHLPFAPGTLPP-------PNLPVSMANPLHPNLPATTTMPSSLPLGPGL-GSAAAQSPAIVAAVQGNLL-PSASP 1186
Cdd:pfam17823  283 AKHMPSDTMARNPAAPmgaqaqgPIIQVSTDQPVHNTAGEPTPSPSNTTLEPNTpKSVASTNLAVVTTTKAQAKePSASP 362
                          250
                   ....*....|....*.
gi 966972882  1187 LPDPGTPLPPDPTAPS 1202
Cdd:pfam17823  363 VPVLHTSMIPEVEATS 378
PHA03247 PHA03247
large tegument protein UL36; Provisional
970-1201 5.72e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 5.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  970 PIPPTGAAGP--------PAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPP 1041
Cdd:PHA03247 2739 PAPPAVPAGPatpggparPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAL 2818
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882 1042 PGPHGPSPF-----PNQQTPPSMMPGAVP------GSGHPG--VAGNAPLGLPFGMPPPPPPPAPSIIPFGSLADSI-SI 1107
Cdd:PHA03247 2819 PPAASPAGPlppptSAQPTAPPPPPGPPPpslplgGSVAPGgdVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTeSF 2898
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882 1108 NLPPPPNLHGHHHHLPFAPGTLPPPNLPVSMANPLH-PNLPATTTMPSSLPLGPGLGSAAAQSPAIVAAVQGN--LLPSA 1184
Cdd:PHA03247 2899 ALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPpPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRvaVPRFR 2978
                         250
                  ....*....|....*..
gi 966972882 1185 SPLPDPGTPLPPDPTAP 1201
Cdd:PHA03247 2979 VPQPAPSREAPASSTPP 2995
PHA03247 PHA03247
large tegument protein UL36; Provisional
969-1201 6.32e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 6.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  969 QPIPPTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIGQAgstagpqqqqpagapqpgavppgvpppgphGPS 1048
Cdd:PHA03247 2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPA------------------------------RPA 2758
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882 1049 PFPNQQTPPSMMPGAVPGSGhPGVAGNAPLGLPFGMPPPPPPPAPSIipfgslADSISINLPPPPNLHGHHHhlPFAPGT 1128
Cdd:PHA03247 2759 RPPTTAGPPAPAPPAAPAAG-PPRRLTRPAVASLSESRESLPSPWDP------ADPPAAVLAPAAALPPAAS--PAGPLP 2829
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882 1129 LPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQSPAIVAAVQGNllPSASPLPDPGT-------PLPPDPTAP 1201
Cdd:PHA03247 2830 PPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPAR--PPVRRLARPAVsrstesfALPPDQPER 2907
CAF-1_p150 pfam11600
Chromatin assembly factor 1 complex p150 subunit, N-terminal; CAF-1_p150 is a polypeptide ...
748-851 7.47e-03

Chromatin assembly factor 1 complex p150 subunit, N-terminal; CAF-1_p150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesized and acetylated histones H3/H4 into chromatin during DNA replication and repair. CAF-1_p150 includes the HP1 interaction site, the PEST, KER and ED interacting sites. CAF-1_p150 interacts directly with newly synthesized and acetylated histones through the acidic KER and ED domains. The PEST domain is associated with proteins that undergo rapid proteolysis.


Pssm-ID: 402959 [Multi-domain]  Cd Length: 164  Bit Score: 38.52  E-value: 7.47e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   748 ERIEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKESEKSDGDPiVDPEKEKEPK 827
Cdd:pfam11600   19 EKDKERLRRQLKLEAEKEEKERLKEEAKAEKERAKEEARRKKEEEKELKEKERREKKEKDEKEKAEKLR-LKEEKRKEKQ 97
                           90       100
                   ....*....|....*....|....
gi 966972882   828 EGQEEVLKEVVESEGERKTKVERD 851
Cdd:pfam11600   98 EALEAKLEEKRKKEEEKRLKEEEK 121
PHA03169 PHA03169
hypothetical protein; Provisional
737-855 7.69e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 40.34  E-value: 7.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  737 SGIAGTTSDEPERIEESGNDEARVEGQATDEKKEPKEPREG-GGAIEEEAKEKTSEAPKKDEEKGKEGDSEKESEKSDGD 815
Cdd:PHA03169  102 SPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPShPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPP 181
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 966972882  816 PIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEG 855
Cdd:PHA03169  182 TSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQ 221
PHA03169 PHA03169
hypothetical protein; Provisional
686-831 9.54e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 39.95  E-value: 9.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882  686 RVASAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGiagttSDEPERIEESGNDEARVEGQAT 765
Cdd:PHA03169   38 GTAARAAKPAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQG-----GPSGSGSESVGSPTPSPSGSAE 112
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 966972882  766 DEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEK--ESEKSDGDPIVDPEKEKEPKEGQE 831
Cdd:PHA03169  113 ELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPEShnPSPNQQPSSFLQPSHEDSPEEPEP 180
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
742-932 9.69e-03

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 40.34  E-value: 9.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   742 TTSDEPERIEESGNDEARVEGQATDEKKEpkepregggaIEEEAKEKTSEAPKKDEEKGKEGDSEKESEKSDGDPIVDPE 821
Cdd:pfam02463  308 RKVDDEEKLKESEKEKKKAEKELKKEKEE----------IEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLA 377
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966972882   822 KEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKI------KSLVALLVETQM 895
Cdd:pfam02463  378 KKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIelkqgkLTEEKEELEKQE 457
                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 966972882   896 KKLEIKLRHFEELETIMDREREALEYQRQQLLADRQA 932
Cdd:pfam02463  458 LKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQK 494
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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