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    CBFA2T3 CBFA2/RUNX1 partner transcriptional co-repressor 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 698233, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CBFA2T3provided by VGNC
    Official Full Name
    CBFA2/RUNX1 partner transcriptional co-repressor 3provided by VGNC
    Primary source
    VGNC:VGNC:104685
    See related
    Ensembl:ENSMMUG00000063909
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CBFA2T3 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (75897955..75997942, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (73716694..73818231, complement)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene galactosamine (N-acetyl)-6-sulfatase Neighboring gene trafficking protein particle complex subunit 2L Neighboring gene PABPN1 like, cytoplasmic Neighboring gene uncharacterized LOC114674460 Neighboring gene translation initiation factor IF-2 Neighboring gene uncharacterized LOC114674308 Neighboring gene acyl-CoA synthetase family member 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CBFA2T3
    Names
    CBFA2/RUNX1 translocation partner 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      75897955..75997942 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001090215.4 → XP_001090215.2  protein CBFA2T3 isoform X1

      UniProtKB/TrEMBL
      A0A5F8A4A7, A0A5F8AB43
      Related
      ENSMMUP00000074143.1, ENSMMUT00000105972.1
      Conserved Domains (4) summary
      pfam01753
      Location:672 → 708
      zf-MYND; MYND finger
      pfam07531
      Location:290 → 376
      TAFH; NHR1 homology to TAF
      pfam08788
      Location:495 → 561
      NHR2; NHR2 domain like
      cl23750
      Location:600 → 654
      vATP-synt_E; ATP synthase (E/31 kDa) subunit

    2. XM_002802592.3 → XP_002802638.2  protein CBFA2T3 isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZYF2, H9ZEQ4
      Related
      ENSMMUP00000070171.1, ENSMMUT00000107372.1
      Conserved Domains (4) summary
      pfam01753
      Location:647 → 683
      zf-MYND; MYND finger
      pfam07531
      Location:265 → 351
      TAFH; NHR1 homology to TAF
      pfam08788
      Location:470 → 536
      NHR2; NHR2 domain like
      cl23750
      Location:575 → 629
      vATP-synt_E; ATP synthase (E/31 kDa) subunit

    3. XM_028841406.1 → XP_028697239.1  protein CBFA2T3 isoform X4

      UniProtKB/TrEMBL
      G7NQ93
      Conserved Domains (4) summary
      pfam08788
      Location:292 → 358
      NHR2; NHR2 domain like
      pfam01753
      Location:469 → 505
      zf-MYND; MYND finger
      pfam07531
      Location:87 → 173
      TAFH; NHR1 homology to TAF
      cl23750
      Location:397 → 451
      vATP-synt_E; ATP synthase (E/31 kDa) subunit

    4. XM_028841405.1 → XP_028697238.1  protein CBFA2T3 isoform X3

      UniProtKB/TrEMBL
      A0A5F8A6X2, G7NQ93
      Related
      ENSMMUP00000072706.1, ENSMMUT00000092417.1
      Conserved Domains (4) summary
      COG2811
      Location:427 → 488
      NtpH; Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
      pfam08788
      Location:317 → 383
      NHR2; NHR2 domain like
      pfam01753
      Location:494 → 530
      zf-MYND; MYND finger
      pfam07531
      Location:112 → 198
      TAFH; NHR1 homology to TAF

    5. XM_015126797.2 → XP_014982283.1  protein CBFA2T3 isoform X5

      UniProtKB/TrEMBL
      A0A5F8A0H6
      Conserved Domains (4) summary
      pfam01753
      Location:428 → 464
      zf-MYND; MYND finger
      pfam07531
      Location:46 → 132
      TAFH; NHR1 homology to TAF
      pfam08788
      Location:251 → 317
      NHR2; NHR2 domain like
      cl23750
      Location:356 → 410
      vATP-synt_E; ATP synthase (E/31 kDa) subunit
    Nucleotide Protein
    Heading Accession and Version

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