These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

1. NM_001278391.1 → NP_001265320.1  contactin-associated protein 1 precursor

   See identical proteins and their annotated locations for NP_001265320.1

   Status: VALIDATED

   Source sequence(s)

   JV523655, JV596591, JV631616

   UniProtKB/TrEMBL

   F7HIS4, H9F0L4

   Related

   ENSMMUP00000010627.4, ENSMMUT00000011339.4

   Conserved Domains (7) summary

   smart00294
   Location:1304 → 1322

   4.1m; putative band 4.1 homologues' binding motif

   smart00231
   Location:24 → 168

   FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain

   smart00282
   Location:1083 → 1218

   LamG; Laminin G domain

   cd00057
   Location:36 → 167

   FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.

   cd00110
   Location:175 → 330

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

   pfam00008
   Location:544 → 575

   EGF; EGF-like domain

   cl00085
   Location:584 → 658

   FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...

The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference Mmul_10 Primary Assembly

Genomic

1. NC_041769.1 Reference Mmul_10 Primary Assembly

   Range

   53814769..53832140

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. XM_015119721.2 → XP_014975207.1  contactin-associated protein 1 isoform X1

   UniProtKB/TrEMBL

   F7B7T3, H9F0L4

   Related

   ENSMMUP00000008006.3, ENSMMUT00000008518.4

   Conserved Domains (7) summary

   smart00294
   Location:1228 → 1246

   4.1m; putative band 4.1 homologues' binding motif

   smart00231
   Location:1 → 92

   FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain

   smart00282
   Location:1007 → 1142

   LamG; Laminin G domain

   cd00057
   Location:1 → 91

   FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.

   cd00110
   Location:99 → 254

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

   pfam00008
   Location:468 → 499

   EGF; EGF-like domain

   cl00085
   Location:508 → 582

   FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...

RNA

1. XR_001440462.2 RNA Sequence