U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    U2SURP U2 snRNP associated SURP domain containing [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 716408, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    U2SURPprovided by VGNC
    Official Full Name
    U2 snRNP associated SURP domain containingprovided by VGNC
    Primary source
    VGNC:VGNC:79889
    See related
    Ensembl:ENSMMUG00000002775
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    SR140
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See U2SURP in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (45086550..45181377)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (158789385..158884908, complement)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106997091 Neighboring gene progestin and adipoQ receptor family member 9 Neighboring gene uncharacterized LOC106997083 Neighboring gene uncharacterized LOC114676263 Neighboring gene carbohydrate sulfotransferase 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    U2 snRNP-associated SURP motif-containing protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      45086550..45181377
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028843757.1 → XP_028699590.1  U2 snRNP-associated SURP motif-containing protein isoform X4

      Conserved Domains (3) summary
      smart00582
      Location:132 → 267
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      pfam01805
      Location:20 → 71
      Surp; Surp module
      cd21370
      Location:427 → 475
      cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

    2. XM_028843754.1 → XP_028699587.1  U2 snRNP-associated SURP motif-containing protein isoform X1

      UniProtKB/TrEMBL
      F7H296, I2CTB0
      Related
      ENSMMUP00000003723.4, ENSMMUT00000003941.4
      Conserved Domains (5) summary
      smart00582
      Location:541 → 676
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      COG0724
      Location:156 → 352
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam01805
      Location:429 → 480
      Surp; Surp module
      cd12223
      Location:273 → 356
      RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
      cd21370
      Location:836 → 884
      cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

    3. XM_028843756.1 → XP_028699589.1  U2 snRNP-associated SURP motif-containing protein isoform X3

      UniProtKB/TrEMBL
      F7H296
      Conserved Domains (5) summary
      smart00582
      Location:541 → 676
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      COG0724
      Location:156 → 352
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam01805
      Location:429 → 480
      Surp; Surp module
      cd12223
      Location:273 → 356
      RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
      cd21370
      Location:836 → 884
      cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

    4. XM_028843755.1 → XP_028699588.1  U2 snRNP-associated SURP motif-containing protein isoform X2

      UniProtKB/TrEMBL
      F7H296, H9FS02
      Related
      ENSMMUP00000043841.2, ENSMMUT00000073275.2
      Conserved Domains (5) summary
      smart00582
      Location:540 → 675
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      COG0724
      Location:156 → 351
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam01805
      Location:428 → 479
      Surp; Surp module
      cd12223
      Location:272 → 355
      RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
      cd21370
      Location:835 → 883
      cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials