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    CDH18 cadherin 18 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 701472, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CDH18provided by VGNC
    Official Full Name
    cadherin 18provided by VGNC
    Primary source
    VGNC:VGNC:70811
    Locus tag
    EGK_16383
    See related
    Ensembl:ENSMMUG00000004389
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CDH18 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (19586429..20701656, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (19890837..21013535, complement)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene 60 kDa heat shock protein, mitochondrial pseudogene Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC114678671 Neighboring gene uncharacterized LOC114678757

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in adherens junction organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell junction assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catenin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cadherin-18
    Names
    Cadherin-14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      19586429..20701656 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015139758.2 → XP_014995244.1  cadherin-18 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q500, A0A8J8XSY9, F7FMS7, G7MUQ0, H9ERS5
      Conserved Domains (3) summary
      cd11304
      Location:387 → 484
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:79 → 157
      CA; Cadherin repeats
      pfam01049
      Location:637 → 783
      Cadherin_C; Cadherin cytoplasmic region

    2. XM_001088306.4 → XP_001088306.1  cadherin-18 isoform X1

      See identical proteins and their annotated locations for XP_001088306.1

      UniProtKB/TrEMBL
      A0A1D5Q500, A0A8J8XSY9, F7FMS7, G7MUQ0, H9ERS5
      Related
      ENSMMUP00000005866.2, ENSMMUT00000006235.4
      Conserved Domains (3) summary
      cd11304
      Location:387 → 484
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:79 → 157
      CA; Cadherin repeats
      pfam01049
      Location:637 → 783
      Cadherin_C; Cadherin cytoplasmic region

    3. XM_015139759.2 → XP_014995245.1  cadherin-18 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q500, A0A8J8XSY9, F7FMS7, G7MUQ0, H9ERS5
      Conserved Domains (3) summary
      cd11304
      Location:387 → 484
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:79 → 157
      CA; Cadherin repeats
      pfam01049
      Location:637 → 783
      Cadherin_C; Cadherin cytoplasmic region

    4. XM_028849356.1 → XP_028705189.1  cadherin-18 isoform X3

      Conserved Domains (2) summary
      cd11304
      Location:387 → 484
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:79 → 157
      CA; Cadherin repeats

    5. XM_028849355.1 → XP_028705188.1  cadherin-18 isoform X2

      Conserved Domains (2) summary
      cd11304
      Location:387 → 484
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:79 → 157
      CA; Cadherin repeats

    6. XM_015139763.2 → XP_014995249.1  cadherin-18 isoform X3

      Conserved Domains (2) summary
      cd11304
      Location:387 → 484
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:79 → 157
      CA; Cadherin repeats

    7. XM_015139760.2 → XP_014995246.1  cadherin-18 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q500, A0A8J8XSY9, F7FMS7, G7MUQ0, H9ERS5
      Conserved Domains (3) summary
      cd11304
      Location:387 → 484
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:79 → 157
      CA; Cadherin repeats
      pfam01049
      Location:637 → 783
      Cadherin_C; Cadherin cytoplasmic region

    8. XM_015139757.2 → XP_014995243.1  cadherin-18 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q500, A0A8J8XSY9, F7FMS7, G7MUQ0, H9ERS5
      Conserved Domains (3) summary
      cd11304
      Location:387 → 484
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:79 → 157
      CA; Cadherin repeats
      pfam01049
      Location:637 → 783
      Cadherin_C; Cadherin cytoplasmic region

    9. XM_028849354.1 → XP_028705187.1  cadherin-18 isoform X2

      Conserved Domains (2) summary
      cd11304
      Location:387 → 484
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:79 → 157
      CA; Cadherin repeats

    10. XM_028849353.1 → XP_028705186.1  cadherin-18 isoform X2

      Conserved Domains (2) summary
      cd11304
      Location:387 → 484
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:79 → 157
      CA; Cadherin repeats

    11. XM_028849352.1 → XP_028705185.1  cadherin-18 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q500, A0A8J8XSY9, F7FMS7, G7MUQ0, H9ERS5
      Conserved Domains (3) summary
      cd11304
      Location:387 → 484
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:79 → 157
      CA; Cadherin repeats
      pfam01049
      Location:637 → 783
      Cadherin_C; Cadherin cytoplasmic region

    12. XM_028849351.1 → XP_028705184.1  cadherin-18 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q500, A0A8J8XSY9, F7FMS7, G7MUQ0, H9ERS5
      Conserved Domains (3) summary
      cd11304
      Location:387 → 484
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:79 → 157
      CA; Cadherin repeats
      pfam01049
      Location:637 → 783
      Cadherin_C; Cadherin cytoplasmic region

    13. XM_015139762.2 → XP_014995248.1  cadherin-18 isoform X2

      Conserved Domains (2) summary
      cd11304
      Location:387 → 484
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:79 → 157
      CA; Cadherin repeats
    Nucleotide Protein
    Heading Accession and Version

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