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    Pathogenesis-related thaumatin superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817018, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pathogenesis-related thaumatin superfamily protein
    Primary source
    TAIR:AT2G24810
    Locus tag
    AT2G24810
    See related
    Araport:AT2G24810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27C12.27; F27C12_27
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (10573862..10574699)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Peroxidase superfamily protein Neighboring gene translocon at the inner envelope membrane of chloroplasts 55-II Neighboring gene ncRNA Neighboring gene zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pathogenesis-related thaumatin superfamily protein
    NP_180054.1
    • Pathogenesis-related thaumatin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G19320.1); Has 1365 Blast hits to 1239 proteins in 144 species: Archae - 0; Bacteria - 6; Metazoa - 51; Fungi - 51; Plants - 1256; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10573862..10574699
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128040.1 → NP_180054.1  Pathogenesis-related thaumatin superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180054.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9SK51
      Conserved Domains (1) summary
      cl02511
      Location:33 → 192
      GH64-TLP-SF; glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins
    Nucleotide Protein
    Heading Accession and Version

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