U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    EMB3114 Mitochondrial transcription termination factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818173, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    EMB3114
    Official Full Name
    Mitochondrial transcription termination factor family protein
    Primary source
    TAIR:AT2G36000
    Locus tag
    AT2G36000
    See related
    Araport:AT2G36000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMBRYO DEFECTIVE 3114; F11F19.9; F11F19_9
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See EMB3114 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (15117015..15119043)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene Putative lysine decarboxylase family protein Neighboring gene E2F transcription factor 3 Neighboring gene HVA22-like protein J Neighboring gene Ovate family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis thaliana mTERF proteins: evolution and functional classification. Kleine T. Front Plant Sci, 2012. PMID 23087700, Free PMC Article
    2. Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. Meinke DW. New Phytol, 2020 Apr. PMID 31334862
    3. Control of organelle gene expression by the mitochondrial transcription termination factor mTERF22 in Arabidopsis thaliana plants. Shevtsov S, et al. PLoS One, 2018. PMID 30059532, Free PMC Article
    4. Arabidopsis Seedling Lethal 1 Interacting With Plastid-Encoded RNA Polymerase Complex Proteins Is Essential for Chloroplast Development. Jiang D, et al. Front Plant Sci, 2020. PMID 33391315, Free PMC Article
    5. Plastid gene expression and plant development require a plastidic protein of the mitochondrial transcription termination factor family. Babiychuk E, et al. Proc Natl Acad Sci U S A, 2011 Apr 19. PMID 21464319, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_179926.2
    NM_179927.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables plastid PEP RNA polymerase core enzyme binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryonic morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plastid gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast nucleoid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Mitochondrial transcription termination factor family protein
    NP_850257.1
    • Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G34620.1); Has 810 Blast hits to 602 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 725; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
    NP_850258.1
    • Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G34620.1); Has 802 Blast hits to 604 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 717; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15117015..15119043
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179926.2 → NP_850257.1  Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850257.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LF84, Q8S8E4, Q9SJ50
      UniProtKB/TrEMBL
      A0A178VVE5, A0A654F0P8
      Conserved Domains (1) summary
      cl19765
      Location:151 → 307
      mTERF

    2. NM_179927.2 → NP_850258.1  Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850258.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVE5
      Conserved Domains (1) summary
      cl19765
      Location:151 → 307
      mTERF
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SJ50.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.