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Conserved domains on  [gi|30686636|ref|NP_850258|]
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Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

Protein Classification

mTERF domain-containing protein( domain architecture ID 139977)

mTERF (mitochondrial transcription termination factor) domain-containing protein may function as a transcription termination factor that binds promoter DNA and regulates mitochondrial replication and transcription

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
mTERF super family cl47744
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 151-307 6.18e-34

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


The actual alignment was detected with superfamily member pfam02536:

Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 126.18  E-value: 6.18e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686636   151 LREVGVDSIfDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGILDPH------KHTYLLSCSvDNKLVPRIDYFEKLGFS 224
Cdd:pfam02536 153 LKELGFSVE-DVWKIIKKCPEILGLSIEKKLKKKIEFLKKCGLSEEElprvikKYPQILSLS-ERTILNRVEFLLGLGFS 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686636   225 RRSATAMFKRFPQLFNYSIaENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNE 304
Cdd:pfam02536 231 KEEVAKMVKRFPQLLGLSI-EVLKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPRIKALVSKGLECSLSWMLACSD 309


                  ...
gi 30686636   305 AGF 307
Cdd:pfam02536 310 ERF 312
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 151-307 6.18e-34

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 126.18  E-value: 6.18e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686636   151 LREVGVDSIfDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGILDPH------KHTYLLSCSvDNKLVPRIDYFEKLGFS 224
Cdd:pfam02536 153 LKELGFSVE-DVWKIIKKCPEILGLSIEKKLKKKIEFLKKCGLSEEElprvikKYPQILSLS-ERTILNRVEFLLGLGFS 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686636   225 RRSATAMFKRFPQLFNYSIaENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNE 304
Cdd:pfam02536 231 KEEVAKMVKRFPQLLGLSI-EVLKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPRIKALVSKGLECSLSWMLACSD 309


                  ...
gi 30686636   305 AGF 307
Cdd:pfam02536 310 ERF 312
PLN03196 PLN03196
MOC1-like protein; Provisional
 209-315 2.34e-17

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 82.45  E-value: 2.34e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686636  209 NKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIaENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACA 288
Cdd:PLN03196 338 NVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNL-EIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVA 416

                         90       100
                 ....*....|....*....|....*..
gi 30686636  289 AKGVRFPLPVMLKTNEAGFRDTLEVHF 315
Cdd:PLN03196 417 KKGIKCSLAWFLNCSDDKFEQRMSGDF 443
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 151-307 6.18e-34

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 126.18  E-value: 6.18e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686636   151 LREVGVDSIfDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGILDPH------KHTYLLSCSvDNKLVPRIDYFEKLGFS 224
Cdd:pfam02536 153 LKELGFSVE-DVWKIIKKCPEILGLSIEKKLKKKIEFLKKCGLSEEElprvikKYPQILSLS-ERTILNRVEFLLGLGFS 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686636   225 RRSATAMFKRFPQLFNYSIaENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNE 304
Cdd:pfam02536 231 KEEVAKMVKRFPQLLGLSI-EVLKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPRIKALVSKGLECSLSWMLACSD 309


                  ...
gi 30686636   305 AGF 307
Cdd:pfam02536 310 ERF 312
PLN03196 PLN03196
MOC1-like protein; Provisional
 209-315 2.34e-17

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 82.45  E-value: 2.34e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686636  209 NKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIaENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACA 288
Cdd:PLN03196 338 NVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNL-EIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVA 416

                         90       100
                 ....*....|....*....|....*..
gi 30686636  289 AKGVRFPLPVMLKTNEAGFRDTLEVHF 315
Cdd:PLN03196 417 KKGIKCSLAWFLNCSDDKFEQRMSGDF 443
PLN03196 PLN03196
MOC1-like protein; Provisional
 181-277 3.36e-12

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 66.66  E-value: 3.36e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686636  181 LRPTLYFLQRIGILDPHKHTY--LLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYLmveM 258
Cdd:PLN03196  92 MRERVEFLHKLGLTIEDINEYplVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYL---Q 168

                         90       100
                 ....*....|....*....|....*
gi 30686636  259 GRDVR-----EVLE-FPQYFSFSLE 277
Cdd:PLN03196 169 GLDVKrqdipRVLErYPELLGFKLE 193
PLN03196 PLN03196
MOC1-like protein; Provisional
 170-293 2.17e-05

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 45.86  E-value: 2.17e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686636  170 PRLLACSVDHQLRPTLYFLQRIGI-----------------------LDPHKhTYLLSCSVDNKLVPRI--DYFEKLGF- 223
Cdd:PLN03196 113 PLVLGCSVKKNMIPVLDYLEKLGVtrsslpellrrypqvlhasvvvdLAPVV-KYLQGLDVKRQDIPRVleRYPELLGFk 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686636  224 -----------------SRRSATAMFKRFPQLFNYSIAENYEPKLKYLmVEMG---RDVREVLE-FPQYFSFSLENRIKP 282
Cdd:PLN03196 192 legtmstsvaylvsigvAPRDIGPMLTRFPEILGMRVGNNIKPKVDYL-ESLGlprLAVARILEkRPYILGFDLEETVKP 270

                        170
                 ....*....|.
gi 30686636  283 RHEACAAKGVR 293
Cdd:PLN03196 271 NVECLLEFGVR 281
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 215-277 2.41e-05

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 45.28  E-value: 2.41e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30686636   215 IDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYLmveMGRDV------REVLEFPQYFSFSLE 277
Cdd:pfam02536   1 LSLLESLGVTDSQISKILTRYPPVLHADVEKDLAPKLQFL---LSLGAsssdlgKILSKYPRILGFKLE 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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