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    AAR2 protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842969, updated on 18-Sep-2024

    Summary

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    Official Full Name
    AAR2 protein family
    Primary source
    TAIR:AT1G66510
    Locus tag
    AT1G66510
    See related
    Araport:AT1G66510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28G11.5; F28G11_5
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    15
    Sequence:
    Chromosome: 1; NC_003070.9 (24812793..24816620)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene Pre-mRNA cleavage complex II Neighboring gene formyltransferase Neighboring gene Arginyl-tRNA synthetase, class Ic Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis AAR2, a conserved splicing factor in eukaryotes, acts in microRNA biogenesis. Fan L, et al. Proc Natl Acad Sci U S A, 2022 Oct 11. PMID 36191209, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis AAR2, a conserved splicing factor in eukaryotes, acts in microRNA biogenesis.
      Title: Arabidopsis AAR2, a conserved splicing factor in eukaryotes, acts in microRNA biogenesis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001334244.1
    NM_105322.2
    NM_179519.3
    NM_179520.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    part_of microprocessor complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nuclear dicing body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AAR2 protein family
    NP_564876.1
    • AAR2 protein family; CONTAINS InterPro DOMAIN/s: AAR2 (InterPro:IPR007946); Has 319 Blast hits to 307 proteins in 161 species: Archae - 0; Bacteria - 3; Metazoa - 130; Fungi - 91; Plants - 45; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
    NP_849850.1
    • AAR2 protein family; CONTAINS InterPro DOMAIN/s: AAR2 (InterPro:IPR007946); Has 319 Blast hits to 307 proteins in 161 species: Archae - 0; Bacteria - 3; Metazoa - 130; Fungi - 91; Plants - 45; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
    NP_849851.1
    • AAR2 protein family; CONTAINS InterPro DOMAIN/s: AAR2 (InterPro:IPR007946); Has 287 Blast hits to 279 proteins in 146 species: Archae - 0; Bacteria - 3; Metazoa - 130; Fungi - 66; Plants - 43; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24812793..24816620
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179519.3 → NP_849850.1  AAR2 protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849850.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEI9, A0A5S9WSL4, A0A654ELX0, Q9C711
      Conserved Domains (1) summary
      pfam05282
      Location:12 → 364
      AAR2; AAR2 protein

    2. NM_001334244.1 → NP_001323254.1  AAR2 protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEI9, A0A5S9WSL4, A0A654ELX0, Q9C711
      Conserved Domains (1) summary
      pfam05282
      Location:12 → 364
      AAR2; AAR2 protein

    3. NM_105322.2 → NP_564876.1  AAR2 protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564876.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEI9, A0A5S9WSL4, A0A654ELX0, Q9C711
      Conserved Domains (1) summary
      pfam05282
      Location:12 → 364
      AAR2; AAR2 protein

    4. NM_179520.1 → NP_849851.1  AAR2 protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849851.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEI9, A0A5S9WSL4, F4IEV7
      Conserved Domains (3) summary
      cd13777
      Location:1 → 98
      Aar2_N; N-terminal domain of Aar2, a U5 small nuclear ribonucleoprotein particle assembly factor
      cd13778
      Location:147 → 315
      Aar2_C; C-terminal domain of Aar2, a U5 small nuclear ribonucleoprotein particle assembly factor
      pfam05282
      Location:1 → 320
      AAR2; AAR2 protein
    Nucleotide Protein
    Heading Accession and Version

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