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    transcription factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844022, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transcription factor
    Primary source
    TAIR:AT1G76870
    Locus tag
    AT1G76870
    See related
    Araport:AT1G76870
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7O12.4; F7O12_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (28856839..28858851)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene exocyst complex component sec5 Neighboring gene Small nuclear ribonucleoprotein family protein Neighboring gene ncRNA Neighboring gene Duplicated homeodomain-like superfamily protein Neighboring gene ncRNA Neighboring gene Duplicated homeodomain-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transcription factor
    NP_177813.1
    • BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT1G21200.1); Has 406 Blast hits to 351 proteins in 76 species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi - 14; Plants - 127; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28856839..28858851
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334745.1 → NP_001323232.1  transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WBG6, A0A384LLE4, Q9C6K4
      Conserved Domains (1) summary
      pfam13837
      Location:85 → 169
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    2. NM_001334746.1 → NP_001323233.1  transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WBG6, A0A384LLE4, Q9C6K4
      Conserved Domains (1) summary
      pfam13837
      Location:85 → 169
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    3. NM_106338.2 → NP_177813.1  transcription factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177813.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WBG6, A0A384LLE4, Q9C6K4
      Conserved Domains (1) summary
      pfam13837
      Location:85 → 169
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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