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    CCR1 cold, circadian rhythm, and RNA binding 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830082, updated on 18-Sep-2024

    Summary

    Official Symbol
    CCR1
    Official Full Name
    cold, circadian rhythm, and RNA binding 1
    Primary source
    TAIR:AT4G39260
    Locus tag
    AT4G39260
    See related
    Araport:AT4G39260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    and RNA binding 1; ATGRP8; circadian rhythm; cold; GLYCINE-RICH PROTEIN 8; glycine-rich RNA-binding protein 8; GR-RBP8; GRP8; T22F8.160; T22F8_160
    Summary
    Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).
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    Genomic context

    See CCR1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (18273829..18275216, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene RAD-like 1 Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene phenylalanyl-tRNA synthetase, putative / phenylalanine-tRNA ligase

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    General gene information

    NM_120087.4
    NM_179192.2
    NM_179193.2
    NM_179194.1

    Gene Ontology Provided by TAIR

    General protein information

    Preferred Names
    cold, circadian rhythm, and RNA binding 1
    NP_195637.1
    • cold, circadian rhythm, and RNA binding 1 (CCR1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: response to zinc ion, response to salt stress, response to cold, circadian rhythm, innate immune response; LOCATED IN: nucleolus, cell wall, peroxisome, plasma membrane, chloroplast; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: cold, circadian rhythm, and rna binding 2 (TAIR:AT2G21660.2); Has 126 Blast hits to 126 proteins in 35 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 21; Plants - 62; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
    NP_849523.1
    • cold, circadian rhythm, and RNA binding 1 (CCR1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: response to zinc ion, response to salt stress, response to cold, circadian rhythm, innate immune response; LOCATED IN: nucleolus, cell wall, peroxisome, plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: cold, circadian rhythm, and rna binding 2 (TAIR:AT2G21660.2); Has 82664 Blast hits to 34440 proteins in 1574 species: Archae - 59; Bacteria - 22063; Metazoa - 30672; Fungi - 6267; Plants - 13203; Viruses - 1104; Other Eukaryotes - 9296 (source: NCBI BLink).
    NP_849524.1
    • cold, circadian rhythm, and RNA binding 1 (CCR1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: response to zinc ion, response to salt stress, response to cold, circadian rhythm, innate immune response; LOCATED IN: nucleolus, cell wall, peroxisome, plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: cold, circadian rhythm, and rna binding 2 (TAIR:AT2G21660.2); Has 82664 Blast hits to 34440 proteins in 1574 species: Archae - 59; Bacteria - 22063; Metazoa - 30672; Fungi - 6267; Plants - 13203; Viruses - 1104; Other Eukaryotes - 9296 (source: NCBI BLink).
    NP_849525.1
    • cold, circadian rhythm, and RNA binding 1 (CCR1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: response to zinc ion, response to salt stress, response to cold, circadian rhythm, innate immune response; LOCATED IN: nucleolus, cell wall, peroxisome, plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: cold, circadian rhythm, and rna binding 2 (TAIR:AT2G21660.2); Has 82664 Blast hits to 34440 proteins in 1574 species: Archae - 59; Bacteria - 22063; Metazoa - 30672; Fungi - 6267; Plants - 13203; Viruses - 1104; Other Eukaryotes - 9296 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18273829..18275216 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120087.4 → NP_195637.1  cold, circadian rhythm, and RNA binding 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195637.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178UVJ6, B9DFJ8, Q03251, Q94CB0
      UniProtKB/TrEMBL
      A0A384L218
      Conserved Domains (1) summary
      cd21608
      Location:7 → 82
      RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins
    2. NM_179192.2 → NP_849523.1  cold, circadian rhythm, and RNA binding 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849523.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JVC1
      Conserved Domains (1) summary
      cl17169
      Location:9 → 83
      RRM_SF; RNA recognition motif (RRM) superfamily
    3. NM_179193.2 → NP_849524.1  cold, circadian rhythm, and RNA binding 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849524.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FB27, F4JVC0
      Conserved Domains (1) summary
      cl17169
      Location:9 → 83
      RRM_SF; RNA recognition motif (RRM) superfamily
    4. NM_179194.1 → NP_849525.1  cold, circadian rhythm, and RNA binding 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849525.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JVB9
      Conserved Domains (1) summary
      smart00360
      Location:7 → 68
      RRM; RNA recognition motif
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