LOCUS NP_849524 92 aa linear PLN 20-OCT-2022
DEFINITION cold, circadian rhythm, and RNA binding 1 [Arabidopsis thaliana].
ACCESSION NP_849524
VERSION NP_849524.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_179193.2
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 92)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (residues 1 to 92)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 92)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 92)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEE87046.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..92
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
Protein 1..92
/product="cold, circadian rhythm, and RNA binding 1"
/calculated_mol_wt=10099
Region 7..82
/region_name="RRM2_NsCP33_like"
/note="RNA recognition motif 2 (RRM2) found in Nicotiana
sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33)
and similar proteins; cd21608"
/db_xref="CDD:410187"
CDS 1..92
/gene="CCR1"
/locus_tag="AT4G39260"
/gene_synonym="and RNA binding 1; ATGRP8; circadian
rhythm; cold; GLYCINE-RICH PROTEIN 8; glycine-rich
RNA-binding protein 8; GR-RBP8; GRP8; T22F8.160;
T22F8_160"
/coded_by="NM_179193.2:65..343"
/inference="Similar to RNA sequence,
EST:INSD:DR347670.1,INSD:DR184893.1,INSD:DR281943.1,
INSD:DR360686.1,INSD:DR184948.1,INSD:EL064560.1,
INSD:ES026768.1,INSD:ES192467.1,INSD:EH929231.1,
INSD:DR281945.1,INSD:EL247004.1,INSD:EL045834.1,
INSD:ES099268.1,INSD:ES150724.1,INSD:AA720194.1,
INSD:U74119.1,INSD:EL253325.1,INSD:ES023886.1,
INSD:EL044980.1,INSD:ES151072.1,INSD:DR281947.1,
INSD:CB261625.1,INSD:DR347688.1,INSD:DR281884.1,
INSD:ES198255.1,INSD:EL034059.1,INSD:EL093508.1,
INSD:DR281886.1,INSD:DR281895.1,INSD:ES045350.1,
INSD:EG516396.1,INSD:EH876768.1,INSD:ES042405.1,
INSD:EL998365.1,INSD:DR281890.1,INSD:DR281891.1,
INSD:EG502396.1,INSD:DR281888.1,INSD:EL330471.1,
INSD:DR201628.1,INSD:EH823942.1,INSD:DR347721.1,
INSD:ES058903.1,INSD:AV566394.1,INSD:BE844985.1,
INSD:T46354.1,INSD:ES207870.1,INSD:ES065460.1,
INSD:EH818786.1,INSD:EH916681.1,INSD:DR281944.1,
INSD:DR281919.1,INSD:BE529654.1,INSD:DR281950.1,
INSD:ES071469.1,INSD:DR185120.1,INSD:EL232729.1,
INSD:DR347731.1,INSD:AV544383.1,INSD:DR281893.1,
INSD:DR281914.1,INSD:DR281927.1,INSD:DR281887.1,
INSD:EH920499.1,INSD:EG502395.1,INSD:EG498680.1,
INSD:ES106415.1,INSD:DR347739.1,INSD:DR281931.1,
INSD:DR185037.1,INSD:DR184998.1,INSD:EG516398.1,
INSD:ES171635.1,INSD:ES055851.1,INSD:EL259990.1,
INSD:EH903410.1,INSD:DR281901.1,INSD:DR185023.1,
INSD:ES088543.1,INSD:ES105655.1,INSD:EL298107.1,
INSD:DR281951.1,INSD:DR347691.1,INSD:EG522351.1,
INSD:DR281958.1,INSD:ES019227.1,INSD:ES037471.1,
INSD:DR184939.1,INSD:DR281903.1,INSD:ES054390.1,
INSD:EH914494.1,INSD:EH816522.1,INSD:ES036036.1"
/note="cold, circadian rhythm, and RNA binding 1 (CCR1);
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; INVOLVED IN: response to zinc ion, response
to salt stress, response to cold, circadian rhythm, innate
immune response; LOCATED IN: nucleolus, cell wall,
peroxisome, plasma membrane, chloroplast; EXPRESSED IN: 27
plant structures; EXPRESSED DURING: 16 growth stages;
CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine
rich protein (InterPro:IPR015465), RNA recognition motif,
RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta
plait (InterPro:IPR012677); BEST Arabidopsis thaliana
protein match is: cold, circadian rhythm, and rna binding
2 (TAIR:AT2G21660.2); Has 82664 Blast hits to 34440
proteins in 1574 species: Archae - 59; Bacteria - 22063;
Metazoa - 30672; Fungi - 6267; Plants - 13203; Viruses -
1104; Other Eukaryotes - 9296 (source: NCBI BLink)."
/db_xref="GeneID:830082"
/db_xref="TAIR:AT4G39260"
/db_xref="Araport:AT4G39260"
ORIGIN
1 mseveyrcfv gglawatnde dlqrtfsqfg dvidskiind resgrsrgfg fvtfkdekam
61 rdaieemngk eldgrvitvn eaqsrgsggg gw
//