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cold, circadian rhythm, and RNA binding 1 [Arabidopsis thaliana]

NCBI Reference Sequence: NP_849524.1

Identical Proteins FASTA Graphics 

LOCUS       NP_849524                 92 aa            linear   PLN 20-OCT-2022
DEFINITION  cold, circadian rhythm, and RNA binding 1 [Arabidopsis thaliana].
ACCESSION   NP_849524
VERSION     NP_849524.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_179193.2
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 92)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (residues 1 to 92)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 92)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 92)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE87046.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..92
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     Protein         1..92
                     /product="cold, circadian rhythm, and RNA binding 1"
                     /calculated_mol_wt=10099
     Region          7..82
                     /region_name="RRM2_NsCP33_like"
                     /note="RNA recognition motif 2 (RRM2) found in Nicotiana
                     sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33)
                     and similar proteins; cd21608"
                     /db_xref="CDD:410187"
     CDS             1..92
                     /gene="CCR1"
                     /locus_tag="AT4G39260"
                     /gene_synonym="and RNA binding 1; ATGRP8; circadian
                     rhythm; cold; GLYCINE-RICH PROTEIN 8; glycine-rich
                     RNA-binding protein 8; GR-RBP8; GRP8; T22F8.160;
                     T22F8_160"
                     /coded_by="NM_179193.2:65..343"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR347670.1,INSD:DR184893.1,INSD:DR281943.1,
                     INSD:DR360686.1,INSD:DR184948.1,INSD:EL064560.1,
                     INSD:ES026768.1,INSD:ES192467.1,INSD:EH929231.1,
                     INSD:DR281945.1,INSD:EL247004.1,INSD:EL045834.1,
                     INSD:ES099268.1,INSD:ES150724.1,INSD:AA720194.1,
                     INSD:U74119.1,INSD:EL253325.1,INSD:ES023886.1,
                     INSD:EL044980.1,INSD:ES151072.1,INSD:DR281947.1,
                     INSD:CB261625.1,INSD:DR347688.1,INSD:DR281884.1,
                     INSD:ES198255.1,INSD:EL034059.1,INSD:EL093508.1,
                     INSD:DR281886.1,INSD:DR281895.1,INSD:ES045350.1,
                     INSD:EG516396.1,INSD:EH876768.1,INSD:ES042405.1,
                     INSD:EL998365.1,INSD:DR281890.1,INSD:DR281891.1,
                     INSD:EG502396.1,INSD:DR281888.1,INSD:EL330471.1,
                     INSD:DR201628.1,INSD:EH823942.1,INSD:DR347721.1,
                     INSD:ES058903.1,INSD:AV566394.1,INSD:BE844985.1,
                     INSD:T46354.1,INSD:ES207870.1,INSD:ES065460.1,
                     INSD:EH818786.1,INSD:EH916681.1,INSD:DR281944.1,
                     INSD:DR281919.1,INSD:BE529654.1,INSD:DR281950.1,
                     INSD:ES071469.1,INSD:DR185120.1,INSD:EL232729.1,
                     INSD:DR347731.1,INSD:AV544383.1,INSD:DR281893.1,
                     INSD:DR281914.1,INSD:DR281927.1,INSD:DR281887.1,
                     INSD:EH920499.1,INSD:EG502395.1,INSD:EG498680.1,
                     INSD:ES106415.1,INSD:DR347739.1,INSD:DR281931.1,
                     INSD:DR185037.1,INSD:DR184998.1,INSD:EG516398.1,
                     INSD:ES171635.1,INSD:ES055851.1,INSD:EL259990.1,
                     INSD:EH903410.1,INSD:DR281901.1,INSD:DR185023.1,
                     INSD:ES088543.1,INSD:ES105655.1,INSD:EL298107.1,
                     INSD:DR281951.1,INSD:DR347691.1,INSD:EG522351.1,
                     INSD:DR281958.1,INSD:ES019227.1,INSD:ES037471.1,
                     INSD:DR184939.1,INSD:DR281903.1,INSD:ES054390.1,
                     INSD:EH914494.1,INSD:EH816522.1,INSD:ES036036.1"
                     /note="cold, circadian rhythm, and RNA binding 1 (CCR1);
                     FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
                     acid binding; INVOLVED IN: response to zinc ion, response
                     to salt stress, response to cold, circadian rhythm, innate
                     immune response; LOCATED IN: nucleolus, cell wall,
                     peroxisome, plasma membrane, chloroplast; EXPRESSED IN: 27
                     plant structures; EXPRESSED DURING: 16 growth stages;
                     CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine
                     rich protein (InterPro:IPR015465), RNA recognition motif,
                     RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta
                     plait (InterPro:IPR012677); BEST Arabidopsis thaliana
                     protein match is: cold, circadian rhythm, and rna binding
                     2 (TAIR:AT2G21660.2); Has 82664 Blast hits to 34440
                     proteins in 1574 species: Archae - 59; Bacteria - 22063;
                     Metazoa - 30672; Fungi - 6267; Plants - 13203; Viruses -
                     1104; Other Eukaryotes - 9296 (source: NCBI BLink)."
                     /db_xref="GeneID:830082"
                     /db_xref="TAIR:AT4G39260"
                     /db_xref="Araport:AT4G39260"
ORIGIN      
        1 mseveyrcfv gglawatnde dlqrtfsqfg dvidskiind resgrsrgfg fvtfkdekam
       61 rdaieemngk eldgrvitvn eaqsrgsggg gw
//
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