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    TPR16 Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831118, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TPR16
    Official Full Name
    Heat shock protein DnaJ with tetratricopeptide repeat-containing protein
    Primary source
    TAIR:AT5G12430
    Locus tag
    AT5G12430
    See related
    Araport:AT5G12430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DJC31; DNA J protein C31; tetratricopeptide repeat 16
    Summary
    Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.
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    Genomic context

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    See TPR16 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (4027974..4034682, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene THUMP domain-containing protein Neighboring gene O-acyltransferase (WSD1-like) family protein Neighboring gene CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein Neighboring gene FBD-like domain family protein Neighboring gene fringe-like protein (DUF604)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The TPR- and J-domain-containing proteins DJC31 and DJC62 are involved in abiotic stress responses in Arabidopsis thaliana. Dittmer S, et al. J Cell Sci, 2021 Oct 1. PMID 34515300
    2. Evolution of chloroplast J proteins. Chiu CC, et al. PLoS One, 2013. PMID 23894646, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The TPR- and J-domain-containing proteins DJC31 and DJC62 are involved in abiotic stress responses in Arabidopsis thaliana.
      Title: The TPR- and J-domain-containing proteins DJC31 and DJC62 are involved in abiotic stress responses in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    NM_121281.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Heat shock protein DnaJ with tetratricopeptide repeat-containing protein
    NP_568276.2
    • Heat shock protein DnaJ with tetratricopeptide repeat; FUNCTIONS IN: heat shock protein binding, binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ with tetratricopeptide repeat (TAIR:AT2G41520.1); Has 27844 Blast hits to 24585 proteins in 3132 species: Archae - 222; Bacteria - 9738; Metazoa - 5941; Fungi - 3019; Plants - 3250; Viruses - 11; Other Eukaryotes - 5663 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4027974..4034682 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121281.3 → NP_568276.2  Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568276.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UJH5, A0A5S9Y3J5, F4K0Y5
      Conserved Domains (5) summary
      smart00028
      Location:917 → 950
      TPR; Tetratricopeptide repeats
      sd00006
      Location:882 → 907
      TPR; TPR repeat [structural motif]
      pfam00226
      Location:1024 → 1106
      DnaJ; DnaJ domain
      pfam12895
      Location:759 → 850
      ANAPC3; Anaphase-promoting complex, cyclosome, subunit 3
      pfam13414
      Location:882 → 947
      TPR_11; TPR repeat
    Nucleotide Protein
    Heading Accession and Version

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