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Conserved domains on  [gi|30684104|ref|NP_568276|]
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Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

Protein Classification

J domain-containing protein( domain architecture ID 11420683)

J domain-containing protein with tetratricopeptide (TPR) repeats; similar to Homo sapiens DnaJ homolog subfamily C member 7 (DNAJC7) that acts as a co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor

CATH:  1.10.287.110|1.25.40.10
Gene Ontology:  GO:0006457|GO:0001671|GO:0051085|GO:0031072
PubMed:  15170475|9644977|35729039|8016869|30708253|10517866|10542335|9585179
SCOP:  4000605|3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 1024-1106 1.10e-19

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


:

Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 83.68  E-value: 1.10e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104   1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAGQSltrnetkderlwkeigeevrKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:pfam00226    1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGD--------------------PEAEEKFKEINEAYEVLSDPEKRA 60


                   ...
gi 30684104   1104 QYD 1106
Cdd:pfam00226   61 IYD 63
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
779-977 3.54e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.50  E-value: 3.54e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  779 LTMKGEALLMLEKYDAAIKLCEQTVDLAgknspPDSHDTpkdinfriwqchLMLKSSFY--MGKLEEAIASLEKqeqlls 856
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELD-----PDDAEA------------LYNLGLAYlrLGRYEEALADYEQ------ 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  857 atkregnkTLESSIPLAATIRELlrlkaaGNEAFQSGRHTEAVEHYTAALACNvesrPFTAVCFCNRAAAYKALGQFSDA 936
Cdd:COG0457   68 --------ALELDPDDAEALNNL------GLALQALGRYEEALEDYDKALELD----PDDAEALYNLGLALLELGRYDEA 129

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 30684104  937 IADCSLAIALDQNYSKAISRRATLFEMIRDYGQAASDMERY 977
Cdd:COG0457  130 IEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKL 170
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
611-801 1.17e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.96  E-value: 1.17e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  611 WRLRGNNAYKIGDLSRAEESYTQGIDSVPRIETSrnclralmlcYSNRAATRMALGRMREAIADCTMASSIDSNFLKVQV 690
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEA----------LYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  691 RAANCYLSLGEIEDASRYFKKCLQSGSDicvdrkiIVEASEGLqkaqrvSECMHEAGRrlqlrtltdAEKALEILEDSLL 770
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPD-------DAEALYNL------GLALLELGR---------YDEAIEAYERALE 138

                        170       180       190
                 ....*....|....*....|....*....|.
gi 30684104  771 ISTYSEKLLTMKGEALLMLEKYDAAIKLCEQ 801
Cdd:COG0457  139 LDPDDADALYNLGIALEKLGRYEEALELLEK 169
 
Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 1024-1106 1.10e-19

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 83.68  E-value: 1.10e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104   1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAGQSltrnetkderlwkeigeevrKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:pfam00226    1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGD--------------------PEAEEKFKEINEAYEVLSDPEKRA 60


                   ...
gi 30684104   1104 QYD 1106
Cdd:pfam00226   61 IYD 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 1024-1165 3.87e-17

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 79.36  E-value: 3.87e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104 1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAGQSltrnetkderlwkeigeevrKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGD--------------------PEAEEKFKEINEAYEVLSDPEKRA 60

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30684104 1104 QYDLEEEMHNSQKRRDGSSTSGADTDNYPFHSSRRNWREGWSSRKDPSTPRWFDPNRSNRYP 1165
Cdd:COG0484   61 AYDRFGHAAELLLATELAESAAAEAAAAEAKEEAAEAGASEYEAIAEEASQLRLASLLLLLA 122
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 1024-1106 5.44e-16

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 81.11  E-value: 5.44e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104   1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsltRNetKDerlwkeigeevrKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:TIGR02349    1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPD-------RN--KD------------KEAEEKFKEINEAYEVLSDPEKRA 59


                   ...
gi 30684104   1104 QYD 1106
Cdd:TIGR02349   60 QYD 62
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 1024-1106 2.04e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 79.51  E-value: 2.04e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAgqsltrnetkderlwKEIGEEvrkdtDKlFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14298    6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKN---------------KEPDAE-----EK-FKEISEAYAVLSDAEKRA 64


                  ...
gi 30684104  1104 QYD 1106
Cdd:PRK14298   65 QYD 67
DnaJ smart00271
DnaJ molecular chaperone homology domain;
1024-1101 3.60e-15

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 70.73  E-value: 3.60e-15
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30684104    1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAGQSltrnetkderlwkeigeevRKDTDKLFKMIGEAYAVLSDPAK 1101
Cdd:smart00271    2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD-------------------KEEAEEKFKEINEAYEVLSDPEK 60
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
779-977 3.54e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.50  E-value: 3.54e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  779 LTMKGEALLMLEKYDAAIKLCEQTVDLAgknspPDSHDTpkdinfriwqchLMLKSSFY--MGKLEEAIASLEKqeqlls 856
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELD-----PDDAEA------------LYNLGLAYlrLGRYEEALADYEQ------ 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  857 atkregnkTLESSIPLAATIRELlrlkaaGNEAFQSGRHTEAVEHYTAALACNvesrPFTAVCFCNRAAAYKALGQFSDA 936
Cdd:COG0457   68 --------ALELDPDDAEALNNL------GLALQALGRYEEALEDYDKALELD----PDDAEALYNLGLALLELGRYDEA 129

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 30684104  937 IADCSLAIALDQNYSKAISRRATLFEMIRDYGQAASDMERY 977
Cdd:COG0457  130 IEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKL 170
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
611-801 1.17e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.96  E-value: 1.17e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  611 WRLRGNNAYKIGDLSRAEESYTQGIDSVPRIETSrnclralmlcYSNRAATRMALGRMREAIADCTMASSIDSNFLKVQV 690
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEA----------LYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  691 RAANCYLSLGEIEDASRYFKKCLQSGSDicvdrkiIVEASEGLqkaqrvSECMHEAGRrlqlrtltdAEKALEILEDSLL 770
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPD-------DAEALYNL------GLALLELGR---------YDEAIEAYERALE 138

                        170       180       190
                 ....*....|....*....|....*....|.
gi 30684104  771 ISTYSEKLLTMKGEALLMLEKYDAAIKLCEQ 801
Cdd:COG0457  139 LDPDDADALYNLGIALEKLGRYEEALELLEK 169
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 1024-1098 2.58e-13

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 65.26  E-value: 2.58e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30684104 1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAGQsltrnetkderlwkeigeevRKDTDKLFKMIGEAYAVLSD 1098
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPD--------------------DPEAEEKFKEINEAYEVLSD 55
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 880-974 6.10e-12

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 70.01  E-value: 6.10e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104    880 LRLKAAGNEAFQSGRHTEAVEHYTAALACNVESrpftaVCFCNRAAAYKALGQFSDAIADCSLAIALDQNYSKAISRRAT 959
Cdd:TIGR00990  128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-----VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRAN 202

                           90
                   ....*....|....*
gi 30684104    960 LFEMIRDYGQAASDM 974
Cdd:TIGR00990  203 AYDGLGKYADALLDL 217
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 882-975 1.28e-07

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 55.18  E-value: 1.28e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104   882 LKAAGNEAFQSGRHTEAVEHYTAALACNvesrPFTAVCFCNRAAAYKALGQFSDAIADCSLAIALDQNYSKAISRRATLF 961
Cdd:PLN03088    5 LEDKAKEAFVDDDFALAVDLYTQAIDLD----PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80

                          90
                  ....*....|....
gi 30684104   962 EMIRDYGQAASDME 975
Cdd:PLN03088   81 MKLEEYQTAKAALE 94
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 611-862 1.30e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 56.25  E-value: 1.30e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104    611 WRLRGNNAYKIGDLSRAEESYTQGIDSVPRIETSrnclralmlcYSNRAATRMALGRMREAIADCTMASSIDSN-----F 685
Cdd:TIGR02917  196 LLLKGDLLLSLGNIELALAAYRKAIALRPNNIAV----------LLALATILIEAGEFEEAEKHADALLKKAPNsplahY 265

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104    686 LKVQVRaancyLSLGEIEDASRYFKKCLQSGSD----------ICVDRKIIVEASEGLQKAQRVSECMHEAGRRL---QL 752
Cdd:TIGR02917  266 LKALVD-----FQKKNYEDARETLQDALKSAPEylpalllagaSEYQLGNLEQAYQYLNQILKYAPNSHQARRLLasiQL 340

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104    753 RtLTDAEKALEILEDSLLISTYSEKLLTMKGEALLMLEKYDAAIKLCEQtvdlAGKNSPPDShdtpkDINFRIWQCHLMl 832
Cdd:TIGR02917  341 R-LGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAK----ATELDPENA-----AARTQLGISKLS- 409

                          250       260       270
                   ....*....|....*....|....*....|
gi 30684104    833 kssfyMGKLEEAIASLEKQEQLLSATKREG 862
Cdd:TIGR02917  410 -----QGDPSEAIADLETAAQLDPELGRAD 434
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 917-950 2.78e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.05  E-value: 2.78e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 30684104     917 AVCFCNRAAAYKALGQFSDAIADCSLAIALDQNY 950
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
917-950 3.21e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.02  E-value: 3.21e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 30684104    917 AVCFCNRAAAYKALGQFSDAIADCSLAIALDQNY 950
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
 
Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 1024-1106 1.10e-19

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 83.68  E-value: 1.10e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104   1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAGQSltrnetkderlwkeigeevrKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:pfam00226    1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGD--------------------PEAEEKFKEINEAYEVLSDPEKRA 60


                   ...
gi 30684104   1104 QYD 1106
Cdd:pfam00226   61 IYD 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 1024-1165 3.87e-17

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 79.36  E-value: 3.87e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104 1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAGQSltrnetkderlwkeigeevrKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGD--------------------PEAEEKFKEINEAYEVLSDPEKRA 60

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30684104 1104 QYDLEEEMHNSQKRRDGSSTSGADTDNYPFHSSRRNWREGWSSRKDPSTPRWFDPNRSNRYP 1165
Cdd:COG0484   61 AYDRFGHAAELLLATELAESAAAEAAAAEAKEEAAEAGASEYEAIAEEASQLRLASLLLLLA 122
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 1024-1106 5.44e-16

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 81.11  E-value: 5.44e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104   1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsltRNetKDerlwkeigeevrKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:TIGR02349    1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPD-------RN--KD------------KEAEEKFKEINEAYEVLSDPEKRA 59


                   ...
gi 30684104   1104 QYD 1106
Cdd:TIGR02349   60 QYD 62
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 1024-1106 2.04e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 79.51  E-value: 2.04e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAgqsltrnetkderlwKEIGEEvrkdtDKlFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14298    6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKN---------------KEPDAE-----EK-FKEISEAYAVLSDAEKRA 64


                  ...
gi 30684104  1104 QYD 1106
Cdd:PRK14298   65 QYD 67
DnaJ smart00271
DnaJ molecular chaperone homology domain;
1024-1101 3.60e-15

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 70.73  E-value: 3.60e-15
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30684104    1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAGQSltrnetkderlwkeigeevRKDTDKLFKMIGEAYAVLSDPAK 1101
Cdd:smart00271    2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD-------------------KEEAEEKFKEINEAYEVLSDPEK 60
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
1024-1108 4.00e-15

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 71.67  E-value: 4.00e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104 1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDKagqsltrnetkderlwkeiGEEVRKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:COG2214    6 DHYAVLGVPPDASLEEIRQAYRRLAKLLHPDR-------------------GGELKALAEELFQRLNEAYEVLSDPERRA 66


                 ....*
gi 30684104 1104 QYDLE 1108
Cdd:COG2214   67 EYDRE 71
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 1024-1106 4.78e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 78.26  E-value: 4.78e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsltRNetKDErlwkeigeevrKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK10767    5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPD-------RN--PGD-----------KEAEEKFKEIKEAYEVLSDPQKRA 64


                  ...
gi 30684104  1104 QYD 1106
Cdd:PRK10767   65 AYD 67
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
779-977 3.54e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.50  E-value: 3.54e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  779 LTMKGEALLMLEKYDAAIKLCEQTVDLAgknspPDSHDTpkdinfriwqchLMLKSSFY--MGKLEEAIASLEKqeqlls 856
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELD-----PDDAEA------------LYNLGLAYlrLGRYEEALADYEQ------ 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  857 atkregnkTLESSIPLAATIRELlrlkaaGNEAFQSGRHTEAVEHYTAALACNvesrPFTAVCFCNRAAAYKALGQFSDA 936
Cdd:COG0457   68 --------ALELDPDDAEALNNL------GLALQALGRYEEALEDYDKALELD----PDDAEALYNLGLALLELGRYDEA 129

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 30684104  937 IADCSLAIALDQNYSKAISRRATLFEMIRDYGQAASDMERY 977
Cdd:COG0457  130 IEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKL 170
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
611-801 1.17e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.96  E-value: 1.17e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  611 WRLRGNNAYKIGDLSRAEESYTQGIDSVPRIETSrnclralmlcYSNRAATRMALGRMREAIADCTMASSIDSNFLKVQV 690
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEA----------LYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  691 RAANCYLSLGEIEDASRYFKKCLQSGSDicvdrkiIVEASEGLqkaqrvSECMHEAGRrlqlrtltdAEKALEILEDSLL 770
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPD-------DAEALYNL------GLALLELGR---------YDEAIEAYERALE 138

                        170       180       190
                 ....*....|....*....|....*....|.
gi 30684104  771 ISTYSEKLLTMKGEALLMLEKYDAAIKLCEQ 801
Cdd:COG0457  139 LDPDDADALYNLGIALEKLGRYEEALELLEK 169
PRK14280 PRK14280
molecular chaperone DnaJ;
1024-1106 1.82e-13

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 73.60  E-value: 1.82e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsltrnetkderlwkeIGEEvrKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14280    5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPD-------------------INKE--EGADEKFKEISEAYEVLSDDQKRA 63


                  ...
gi 30684104  1104 QYD 1106
Cdd:PRK14280   64 QYD 66
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 1024-1098 2.58e-13

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 65.26  E-value: 2.58e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30684104 1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAGQsltrnetkderlwkeigeevRKDTDKLFKMIGEAYAVLSD 1098
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPD--------------------DPEAEEKFKEINEAYEVLSD 55
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 1016-1121 7.09e-13

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 72.16  E-value: 7.09e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1016 KSRKENSLDMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAGqsltrnetkderlwkeigeevrkDTDKlFKMIGEAYAV 1095
Cdd:PTZ00037   21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG-----------------------DPEK-FKEISRAYEV 76

                          90       100
                  ....*....|....*....|....*...
gi 30684104  1096 LSDPAKRSQYDL--EEEMHNSQKRRDGS 1121
Cdd:PTZ00037   77 LSDPEKRKIYDEygEEGLEGGEQPADAS 104
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 1024-1104 1.85e-12

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 63.09  E-value: 1.85e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104 1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsltRNETkderlwkeigeevRKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:COG5407    1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPD-------RNKG-------------DPKAEERFKEINEAYELLSDAEKRA 60


                 .
gi 30684104 1104 Q 1104
Cdd:COG5407   61 R 61
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 1021-1106 2.02e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 70.50  E-value: 2.02e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1021 NSLDMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsltrnetkderLWKEIGEEvrkdtDKlFKMIGEAYAVLSDPA 1100
Cdd:PRK14276    2 NNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPD---------------INKEPGAE-----EK-YKEVQEAYETLSDPQ 60


                  ....*.
gi 30684104  1101 KRSQYD 1106
Cdd:PRK14276   61 KRAAYD 66
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
838-980 2.62e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.11  E-value: 2.62e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  838 MGKLEEAIASLEKqeqllsATKregnktLESSIPLAatirellrLKAAGNEAFQSGRHTEAVEHYTAALACNvesrPFTA 917
Cdd:COG0457   21 LGRYEEAIEDYEK------ALE------LDPDDAEA--------LYNLGLAYLRLGRYEEALADYEQALELD----PDDA 76

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 30684104  918 VCFCNRAAAYKALGQFSDAIADCSLAIALDQNYSKAISRRATLFEMIRDYGQAASDMERYVNI 980
Cdd:COG0457   77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL 139
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 1023-1106 2.66e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 69.92  E-value: 2.66e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1023 LDMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsltRNetkderlwKEIGEEVRkdtdklFKMIGEAYAVLSDPAKR 1102
Cdd:PRK14292    2 MDYYELLGVSRTASADEIKSAYRKLALKYHPD-------RN--------KEKGAAEK------FAQINEAYAVLSDAEKR 60


                  ....
gi 30684104  1103 SQYD 1106
Cdd:PRK14292   61 AHYD 64
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 880-974 6.10e-12

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 70.01  E-value: 6.10e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104    880 LRLKAAGNEAFQSGRHTEAVEHYTAALACNVESrpftaVCFCNRAAAYKALGQFSDAIADCSLAIALDQNYSKAISRRAT 959
Cdd:TIGR00990  128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-----VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRAN 202

                           90
                   ....*....|....*
gi 30684104    960 LFEMIRDYGQAASDM 974
Cdd:TIGR00990  203 AYDGLGKYADALLDL 217
PRK14297 PRK14297
molecular chaperone DnaJ;
1024-1106 6.48e-12

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 68.66  E-value: 6.48e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsltRNETKderlwkeigeevrKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14297    5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPD-------KNKGN-------------KEAEEKFKEINEAYQVLSDPQKKA 64


                  ...
gi 30684104  1104 QYD 1106
Cdd:PRK14297   65 QYD 67
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
752-1015 7.91e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.57  E-value: 7.91e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  752 LRTLTDAEKALEILEDSLLISTYSEKLLTMKGEALLMLEKYDAAIKLCEQTVDLAgknsppdshdtPKDInfriwQCHLM 831
Cdd:COG0457   18 YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD-----------PDDA-----EALNN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  832 LKSSFY-MGKLEEAIASLEKqeqllsATKREgnktlessiPLAATIRELLrlkaaGNEAFQSGRHTEAVEHYTAALACNv 910
Cdd:COG0457   82 LGLALQaLGRYEEALEDYDK------ALELD---------PDDAEALYNL-----GLALLELGRYDEAIEAYERALELD- 140

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  911 esrPFTAVCFCNRAAAYKALGQFSDAIADCSLAIALDQNYSKAISRRATLFEMIRDYGQAASDMERYVNILTKQMEEKTS 990
Cdd:COG0457  141 ---PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217

                        250       260
                 ....*....|....*....|....*
gi 30684104  991 GTLDRSTSMSNDIRQARIRLSELEE 1015
Cdd:COG0457  218 ALAELLLLALALLLALRLAALALYQ 242
PRK14289 PRK14289
molecular chaperone DnaJ;
1024-1106 8.80e-12

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 68.32  E-value: 8.80e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAGQSltrnetkderlwkeigeevrKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14289    6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD--------------------KEAEEKFKEAAEAYDVLSDPDKRS 65


                  ...
gi 30684104  1104 QYD 1106
Cdd:PRK14289   66 RYD 68
PRK14293 PRK14293
molecular chaperone DnaJ;
1024-1106 9.81e-12

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 68.09  E-value: 9.81e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsltrnetkderLWKEIGEEVRkdtdklFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14293    4 DYYEILGVSRDADKDELKRAYRRLARKYHPD---------------VNKEPGAEDR------FKEINRAYEVLSDPETRA 62


                  ...
gi 30684104  1104 QYD 1106
Cdd:PRK14293   63 RYD 65
PRK14279 PRK14279
molecular chaperone DnaJ;
1024-1106 1.24e-11

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 67.84  E-value: 1.24e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAgqslTRNETKDERlwkeigeevrkdtdklFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14279   10 DFYKELGVSSDASAEEIKKAYRKLARELHPDAN----PGDPAAEER----------------FKAVSEAHDVLSDPAKRK 69


                  ...
gi 30684104  1104 QYD 1106
Cdd:PRK14279   70 EYD 72
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
840-978 1.56e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 65.32  E-value: 1.56e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  840 KLEEAIASLEKQEQLLSATKREGNKTLESSIPLAATIRELLRLKAAGNEAFQSGRHTEAVEHYTAALACNvesrPFTAVC 919
Cdd:COG4785   34 VLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD----PDLAEA 109

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 30684104  920 FCNRAAAYKALGQFSDAIADCSLAIALDQNYSKAISRRATLFEMIRDYGQAASDMERYV 978
Cdd:COG4785  110 YNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKAL 168
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 611-938 1.61e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 66.29  E-value: 1.61e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  611 WRLRGNNAYKIGDLSRAEESYTQGIDSVPR-IETsrncLRALMLCYSNRaatrmalGRMREAIADCTMASSIDSNFLKVQ 689
Cdd:COG2956   11 WYFKGLNYLLNGQPDKAIDLLEEALELDPEtVEA----HLALGNLYRRR-------GEYDRAIRIHQKLLERDPDRAEAL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  690 VRAANCYLSLGEIEDASRYFKKCLQsgsdicvdrkiivEASEGLQKAQRVSECMHEAGrrlqlrtltDAEKALEILEDSL 769
Cdd:COG2956   80 LELAQDYLKAGLLDRAEELLEKLLE-------------LDPDDAEALRLLAEIYEQEG---------DWEKAIEVLERLL 137

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  770 LISTYSEKLLTMKGEALLMLEKYDAAIKLCEQTVDLAGKNSPPdshdtpkdinfriwqchLMLKSSFYM--GKLEEAIAS 847
Cdd:COG2956  138 KLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARA-----------------LLLLAELYLeqGDYEEAIAA 200

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  848 LEkqeqllsatkregnKTLESSIPLAATIRELLRLkaagneAFQSGRHTEAVEHYTAALACNVESRPFTAVcfcnrAAAY 927
Cdd:COG2956  201 LE--------------RALEQDPDYLPALPRLAEL------YEKLGDPEEALELLRKALELDPSDDLLLAL-----ADLL 255

                        330
                 ....*....|.
gi 30684104  928 KALGQFSDAIA 938
Cdd:COG2956  256 ERKEGLEAALA 266
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 1024-1106 1.64e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 67.48  E-value: 1.64e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsltRNETKderlwkeigeevrKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14294    5 DYYEILGVTRDASEEEIKKSYRKLAMKYHPD-------RNPGD-------------KEAEELFKEAAEAYEVLSDPKKRG 64


                  ...
gi 30684104  1104 QYD 1106
Cdd:PRK14294   65 IYD 67
PRK14295 PRK14295
molecular chaperone DnaJ;
1024-1131 2.27e-11

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 67.18  E-value: 2.27e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDkAGQSLTRNETKderlwkeigeevrkdtdklFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14295   10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPD-ANKGDAKAEER-------------------FKEISEAYDVLSDEKKRK 69

                          90       100
                  ....*....|....*....|....*...
gi 30684104  1104 QYDLEEEMHNSQKRRDGSSTSGADTDNY 1131
Cdd:PRK14295   70 EYDEARSLFGNGGFRPGPGGGGGGGFNF 97
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 1024-1106 5.39e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 65.98  E-value: 5.39e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAGQSltrnetkderlwkeigeevrKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14281    4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN--------------------KEAEEHFKEVNEAYEVLSNDDKRR 63


                  ...
gi 30684104  1104 QYD 1106
Cdd:PRK14281   64 RYD 66
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 1024-1106 5.70e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 65.62  E-value: 5.70e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsltrnetkderlwkeIGEEvrKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14283    6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPD-------------------VSEE--EGAEEKFKEISEAYAVLSDDEKRQ 64


                  ...
gi 30684104  1104 QYD 1106
Cdd:PRK14283   65 RYD 67
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 595-739 7.29e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 64.37  E-value: 7.29e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  595 RIEKDVSNAAQEACEKwrlrGNNAYKIGDLSRAEESYTQGIDSVPrietsrNCLRALMLcysnRAATRMALGRMREAIAD 674
Cdd:COG2956  135 RLLKLGPENAHAYCEL----AELYLEQGDYDEAIEALEKALKLDP------DCARALLL----LAELYLEQGDYEEAIAA 200

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 30684104  675 CTMASSIDSNFLKVQVRAANCYLSLGEIEDASRYFKKCLQSGSDICVDRKI--IVEASEGLQKAQRV 739
Cdd:COG2956  201 LERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALadLLERKEGLEAALAL 267
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 1024-1106 7.43e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 65.59  E-value: 7.43e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPD-KAGQsltrnetkderlwkeigeevrKDTDKLFKMIGEAYAVLSDPAKR 1102
Cdd:PRK14277    6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPDlNPGD---------------------KEAEQKFKEINEAYEILSDPQKR 64


                  ....
gi 30684104  1103 SQYD 1106
Cdd:PRK14277   65 AQYD 68
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 757-980 7.85e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 64.37  E-value: 7.85e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  757 DAEKALEILEDSLLISTYSEKLLTMKGEALLMLEKYDAAIKLCEQTVDLAGKNsppdshdtpKDINFRIWQCHLMlkssf 836
Cdd:COG2956   23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR---------AEALLELAQDYLK----- 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  837 yMGKLEEAIASLEK-----------QEQLLSATKREGN--------KTLESSIPLAATIRELLrlkaaGNEAFQSGRHTE 897
Cdd:COG2956   89 -AGLLDRAEELLEKlleldpddaeaLRLLAEIYEQEGDwekaievlERLLKLGPENAHAYCEL-----AELYLEQGDYDE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  898 AVEHYTAALACNVESRPFTAvcfcNRAAAYKALGQFSDAIADCSLAIALDQNYSKAISRRATLFEMIRDYGQAASDMERY 977
Cdd:COG2956  163 AIEALEKALKLDPDCARALL----LLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKA 238


                 ...
gi 30684104  978 VNI 980
Cdd:COG2956  239 LEL 241
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 670-979 9.43e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.98  E-value: 9.43e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  670 EAIADCTMASSIDSNFLKVQVRAANCYLSLGEIEDASRYFKKclqsgsdicvdrkiIVEASEGLQKAQ-RVSECMHEAGr 748
Cdd:COG2956   26 KAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQK--------------LLERDPDRAEALlELAQDYLKAG- 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  749 rlqlrtltDAEKALEILEDSLLISTYSEKLLTMKGEALLMLEKYDAAIKLCEQTVDLAGKNSppdshdtpkDINFRIWQC 828
Cdd:COG2956   91 --------LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENA---------HAYCELAEL 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  829 HLMLkssfymGKLEEAIASLEKqeqLLSATKREgnktlessiplaatIRELLRLkaaGNEAFQSGRHTEAVEHYTAALac 908
Cdd:COG2956  154 YLEQ------GDYDEAIEALEK---ALKLDPDC--------------ARALLLL---AELYLEQGDYEEAIAALERAL-- 205

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 30684104  909 nvESRPFTAVCFCNRAAAYKALGQFSDAIADCSLAIALDQNYSKAIsRRATLFEMIRDYGQAASDMERYVN 979
Cdd:COG2956  206 --EQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLERQLR 273
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 1023-1106 1.41e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 64.48  E-value: 1.41e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1023 LDMYLVLGVVPSCSASDIRKAYRKAALKHHPDK-AGQSltrnetkderlwkeigeevrkDTDKLFKMIGEAYAVLSDPAK 1101
Cdd:PRK14284    1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKnPGDA---------------------EAEKRFKEVSEAYEVLSDAQK 59


                  ....*
gi 30684104  1102 RSQYD 1106
Cdd:PRK14284   60 RESYD 64
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 1024-1106 1.85e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 64.41  E-value: 1.85e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsLTRNETKDERlwkeigeevrkdtdklFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14291    4 DYYEILGVSRNATQEEIKKAYRRLARKYHPD-----FNKNPEAEEK----------------FKEINEAYQVLSDPEKRK 62


                  ...
gi 30684104  1104 QYD 1106
Cdd:PRK14291   63 LYD 65
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 1024-1106 2.72e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 63.61  E-value: 2.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsltRNETKDErlwkeigeevrkdTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14301    5 DYYEVLGVSRDASEDEIKKAYRKLALQYHPD-------RNPDNPE-------------AEQKFKEAAEAYEVLRDAEKRA 64


                  ...
gi 30684104  1104 QYD 1106
Cdd:PRK14301   65 RYD 67
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 1022-1129 5.64e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 62.72  E-value: 5.64e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1022 SLDMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAGQsltrnetkderlwkeigeevrKDTDKLFKMIGEAYAVLSDPAK 1101
Cdd:PRK14300    2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA---------------------KDAEKKFKEINAAYDVLKDEQK 60

                          90       100       110
                  ....*....|....*....|....*....|
gi 30684104  1102 RSQYDL--EEEMHNSQKRRDGSSTSGADTD 1129
Cdd:PRK14300   61 RAAYDRfgHDAFQNQQSRGGGGNHGGFHPD 90
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
611-809 6.18e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.18  E-value: 6.18e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  611 WRLRGNNAYKIGDLSRAEESYTQGIDSVPRIETSrnclralmlcYSNRAATRMALGRMREAIADCTMASSIDSNFLKVQV 690
Cdd:COG0457   45 LYNLGLAYLRLGRYEEALADYEQALELDPDDAEA----------LNNLGLALQALGRYEEALEDYDKALELDPDDAEALY 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  691 RAANCYLSLGEIEDASRYFKKCLQSGSD----------ICVDRKIIVEASEGLQKAQRVSECMHEAGRRLQLRTLTDAEK 760
Cdd:COG0457  115 NLGLALLELGRYDEAIEAYERALELDPDdadalynlgiALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAE 194

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 30684104  761 ALEILEDSLLISTYSEKLLTMKGEALLMLEKYDAAIKLCEQTVDLAGKN 809
Cdd:COG0457  195 VLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQY 243
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 841-980 6.82e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 58.82  E-value: 6.82e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  841 LEEAIASLEKQEQLLSATKREGNKTLESSIPLAATIRELLRLKAAGNEAFQSGRHTEAVEHYTAALACNvesrPFTAVCF 920
Cdd:COG5010   16 LLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD----PNNPELY 91

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  921 CNRAAAYKALGQFSDAIADCSLAIALDQNYSKAISRRATLFEMIRDYGQAASDMERYVNI 980
Cdd:COG5010   92 YNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 1024-1106 7.53e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 61.49  E-value: 7.53e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsltrnetkderLWKEIGEEVRkdtdklFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14299    5 DYYAILGVPKNASQDEIKKAFKKLARKYHPD---------------VNKSPGAEEK------FKEINEAYTVLSDPEKRR 63


                  ...
gi 30684104  1104 QYD 1106
Cdd:PRK14299   64 IYD 66
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 1024-1106 1.92e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 60.96  E-value: 1.92e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsltRNEtkderlwkeigeEVRKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14282    5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPD-------RHP------------ENRKEAEQKFKEIQEAYEVLSDPQKRA 65


                  ...
gi 30684104  1104 QYD 1106
Cdd:PRK14282   66 MYD 68
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 838-1070 2.15e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 61.55  E-value: 2.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  838 MGKLEEAIASLEKQEQLlsatkregnktlessIPLAATIRELLrlkaaGNEAFQSGRHTEAVEHYTAALACNvesrPFTA 917
Cdd:COG3914   91 LGRYEEALALYRRALAL---------------NPDNAEALFNL-----GNLLLALGRLEEALAALRRALALN----PDFA 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  918 VCFCNRAAAYKALGQFSDAIADCSLAIALDQNYSKAISRRATLFEMIRDYGQAASDMERYVNILTKQmeEKTSGTLDRST 997
Cdd:COG3914  147 EAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDN--ADAHSNLLFAL 224

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30684104  998 SMSNDIRQARIRLSELEEKSRKENSLDMYLVLGvVPSCSASDIRKAYRK-AALKHHPDKAGQSLTRNETK-DERL 1070
Cdd:COG3914  225 RQACDWEVYDRFEELLAALARGPSELSPFALLY-LPDDDPAELLALARAwAQLVAAAAAPELPPPPNPRDpDRKL 298
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 1024-1106 3.67e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 59.94  E-value: 3.67e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsltrnetkderlwkeIGEEVRKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14290    4 DYYKILGVDRNASQEDIKKAFRELAKKWHPD-------------------LHPGNKAEAEEKFKEISEAYEVLSDPQKRR 64


                  ...
gi 30684104  1104 QYD 1106
Cdd:PRK14290   65 QYD 67
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 781-980 4.13e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 58.97  E-value: 4.13e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  781 MKGEALLMLEKYDAAIKLCEQTVDLAgknspPDSHDTpkdinfriwqcHLMLKSSFY-MGKLEEAIASLEKqeqLLSATK 859
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDLLEEALELD-----PETVEA-----------HLALGNLYRrRGEYDRAIRIHQK---LLERDP 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  860 REGNKTLEssipLA-------------ATIRELLRLKAAGNEA--------FQSGRHTEAVEHYTAALacnvESRPFTAV 918
Cdd:COG2956   74 DRAEALLE----LAqdylkaglldraeELLEKLLELDPDDAEAlrllaeiyEQEGDWEKAIEVLERLL----KLGPENAH 145

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30684104  919 CFCNRAAAYKALGQFSDAIADCSLAIALDQNYSKAISRRATLFEMIRDYGQAASDMERYVNI 980
Cdd:COG2956  146 AYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ 207
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 1024-1107 6.37e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 59.30  E-value: 6.37e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsLTRNETKDERlwkeigeevrkdtdklFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14278    4 DYYGLLGVSRNASDAEIKRAYRKLARELHPD-----VNPDEEAQEK----------------FKEISVAYEVLSDPEKRR 62


                  ....
gi 30684104  1104 QYDL 1107
Cdd:PRK14278   63 IVDL 66
PRK10266 PRK10266
curved DNA-binding protein;
1024-1151 9.63e-09

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 58.29  E-value: 9.63e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAgqsltrnetkderlwKEIGEEVRkdtdklFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK10266    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS---------------KEPDAEAR------FKEVAEAWEVLSDEQRRA 63

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 30684104  1104 QYDLEEEMHN----SQKRRDGSSTSGADTDNYPFHSSRRNWREGWSSRKDPS 1151
Cdd:PRK10266   64 EYDQLWQHRNdpqfNRQFQHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPAA 115
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 1026-1106 1.07e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 58.46  E-value: 1.07e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1026 YLVLGVVPSCSASDIRKAYRKAALKHHPDKagqsltrnetkderlwkeigEEVRKDTDKLFKMIGEAYAVLSDPAKRSQY 1105
Cdd:PRK14286    7 YDILGVSKSANDEEIKSAYRKLAIKYHPDK--------------------NKGNKESEEKFKEATEAYEILRDPKKRQAY 66


                  .
gi 30684104  1106 D 1106
Cdd:PRK14286   67 D 67
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 1024-1106 2.70e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 57.31  E-value: 2.70e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDKagqsltrnetkderlwkeigEEVRKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14285    4 DYYEILGLSKGASKDEIKKAYRKIAIKYHPDK--------------------NKGNKEAESIFKEATEAYEVLIDDNKRA 63


                  ...
gi 30684104  1104 QYD 1106
Cdd:PRK14285   64 QYD 66
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
889-980 4.19e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 52.09  E-value: 4.19e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  889 AFQSGRHTEAVEHYTAALACNvesrPFTAVCFCNRAAAYKALGQFSDAIAdCSLAIALDQNYSKAISRRATLFEMIRDYG 968
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELD----PDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD 76

                         90
                 ....*....|..
gi 30684104  969 QAASDMERYVNI 980
Cdd:COG3063   77 EALAYLERALEL 88
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 848-980 4.35e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 57.31  E-value: 4.35e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  848 LEKQEQLLSATKREGNKTLESSIPLAATIRELLRLKAAGNEAFQSGRHTEAVEHYTAALACNvesrPFTAVCFCNRAAAY 927
Cdd:COG3914   47 LLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALN----PDNAEALFNLGNLL 122

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 30684104  928 KALGQFSDAIADCSLAIALDQNYSKAISRRATLFEMIRDYGQAASDMERYVNI 980
Cdd:COG3914  123 LALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALEL 175
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 1024-1154 4.86e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 56.56  E-value: 4.86e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsltrnetkderlwkeIGEEvrKDTDKLFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14287    5 DYYEVLGVDRNASVDEVKKAYRKLARKYHPD-------------------VNKA--PDAEDKFKEVKEAYDTLSDPQKKA 63

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 30684104  1104 QYDleEEMHNSQKRRDGSSTSGadtDNYPFHSSRRNWREGWSSRKDPSTPR 1154
Cdd:PRK14287   64 HYD--QFGHTDPNQGFGGGGAG---DFGGFSDIFDMFFGGGGGRRNPNAPR 109
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 779-950 6.01e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.89  E-value: 6.01e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  779 LTMKGEALLMLEKYDAAIKLCEQTVDLAgknspPDshdtpkdiNFRIWQchLMLKSSFYMGKLEEAIASLEKqeqllsAT 858
Cdd:COG4783    7 LYALAQALLLAGDYDEAEALLEKALELD-----PD--------NPEAFA--LLGEILLQLGDLDEAIVLLHE------AL 65

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  859 KREgnktlessiPLAATIRELLrlkaaGNEAFQSGRHTEAVEHYTAALACNvesrPFTAVCFCNRAAAYKALGQFSDAIA 938
Cdd:COG4783   66 ELD---------PDEPEARLNL-----GLALLKAGDYDEALALLEKALKLD----PEHPEAYLRLARAYRALGRPDEAIA 127

                        170
                 ....*....|..
gi 30684104  939 DCSLAIALDQNY 950
Cdd:COG4783  128 ALEKALELDPDD 139
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 882-975 1.28e-07

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 55.18  E-value: 1.28e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104   882 LKAAGNEAFQSGRHTEAVEHYTAALACNvesrPFTAVCFCNRAAAYKALGQFSDAIADCSLAIALDQNYSKAISRRATLF 961
Cdd:PLN03088    5 LEDKAKEAFVDDDFALAVDLYTQAIDLD----PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80

                          90
                  ....*....|....
gi 30684104   962 EMIRDYGQAASDME 975
Cdd:PLN03088   81 MKLEEYQTAKAALE 94
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 611-862 1.30e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 56.25  E-value: 1.30e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104    611 WRLRGNNAYKIGDLSRAEESYTQGIDSVPRIETSrnclralmlcYSNRAATRMALGRMREAIADCTMASSIDSN-----F 685
Cdd:TIGR02917  196 LLLKGDLLLSLGNIELALAAYRKAIALRPNNIAV----------LLALATILIEAGEFEEAEKHADALLKKAPNsplahY 265

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104    686 LKVQVRaancyLSLGEIEDASRYFKKCLQSGSD----------ICVDRKIIVEASEGLQKAQRVSECMHEAGRRL---QL 752
Cdd:TIGR02917  266 LKALVD-----FQKKNYEDARETLQDALKSAPEylpalllagaSEYQLGNLEQAYQYLNQILKYAPNSHQARRLLasiQL 340

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104    753 RtLTDAEKALEILEDSLLISTYSEKLLTMKGEALLMLEKYDAAIKLCEQtvdlAGKNSPPDShdtpkDINFRIWQCHLMl 832
Cdd:TIGR02917  341 R-LGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAK----ATELDPENA-----AARTQLGISKLS- 409

                          250       260       270
                   ....*....|....*....|....*....|
gi 30684104    833 kssfyMGKLEEAIASLEKQEQLLSATKREG 862
Cdd:TIGR02917  410 -----QGDPSEAIADLETAAQLDPELGRAD 434
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
910-980 2.76e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.09  E-value: 2.76e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 30684104  910 VESRPFTAVCFCNRAAAYKALGQFSDAIADCSLAIALDQNYSKAISRRATLFEMIRDYGQAASDMERYVNI 980
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL 71
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 611-714 3.56e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 54.61  E-value: 3.56e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  611 WRLRGNNAYKIGDLSRAEESYTQGIDSVPRietsrnclraLMLCYSNRAATRMALGRMREAIADCTMASSIDSNFLKVQV 690
Cdd:COG3914  115 LFNLGNLLLALGRLEEALAALRRALALNPD----------FAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALN 184

                         90       100
                 ....*....|....*....|....
gi 30684104  691 RAANCYLSLGEIEDASRYFKKCLQ 714
Cdd:COG3914  185 NLGNALQDLGRLEEAIAAYRRALE 208
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 569-984 4.46e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 54.22  E-value: 4.46e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104    569 STGKPSERDPLTRLHKPINnSVMEKARI-EKDVSNAAQEACEKWRLR----GNNAYKIGDLSRAEESYTQGIDSVPRiet 643
Cdd:TIGR00990   84 TEGKTEEKKSTAPKNAPVE-PADELPEIdESSVANLSEEERKKYAAKlkekGNKAYRNKDFNKAIKLYSKAIECKPD--- 159

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104    644 srnclralMLCYSNRAATRMALGRMREAIADCTMASSIDSNFLKVQVRAANCYLSLGEIEDASRYFK-KCLQSG-----S 717
Cdd:TIGR00990  160 --------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTaSCIIDGfrneqS 231

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104    718 DICVDRKIIVEAsegLQKAQRVSECMHEagrrlQLRTLTDAEKALEILEDSLLISTYSEKL----LTMKGEALLML---- 789
Cdd:TIGR00990  232 AQAVERLLKKFA---ESKAKEILETKPE-----NLPSVTFVGNYLQSFRPKPRPAGLEDSNeldeETGNGQLQLGLkspe 303

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104    790 ----EKYDAAIKLCEQTVDLaGKNSPPDSHdtpkDINFR-IWQChlmlkssfYMGKLEEAIASLEKQEQLLSATKregnk 864
Cdd:TIGR00990  304 skadESYEEAARAFEKALDL-GKLGEKEAI----ALNLRgTFKC--------LKGKHLEALADLSKSIELDPRVT----- 365

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104    865 tlESSIPLAATIRELlrlkaagneafqsGRHTEAVEHYTAALACNVESRPFtavcFCNRAAAYKALGQFSDAIADCSLAI 944
Cdd:TIGR00990  366 --QSYIKRASMNLEL-------------GDPDKAEEDFDKALKLNSEDPDI----YYHRAQLHFIKGEFAQAGKDYQKSI 426

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....
gi 30684104    945 ALDQNY--------------SKAISRRATLFEMIRDYGQAASDMERYVNILTKQ 984
Cdd:TIGR00990  427 DLDPDFifshiqlgvtqykeGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ 480
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
1024-1099 8.90e-07

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 47.48  E-value: 8.90e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30684104 1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAGQSLTRnetkderlwkeigEEVRKDTDKLfKMIGEAYAVLSDP 1099
Cdd:COG1076    5 DAFELLGLPPDADDAELKRAYRKLQREHHPDRLAAGLPE-------------EEQRLALQKA-AAINEAYETLKDP 66
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
618-714 1.58e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 1.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  618 AYKIGDLSRAEESYTQGIDSVPRIETSRNclralmlcysNRAATRMALGRMREAIAdCTMASSIDSNFLKVQVRAANCYL 697
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALN----------NLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLL 70

                         90
                 ....*....|....*..
gi 30684104  698 SLGEIEDASRYFKKCLQ 714
Cdd:COG3063   71 ELGDYDEALAYLERALE 87
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 609-714 3.38e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.88  E-value: 3.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  609 EKWRLRGNNAYKIGDLSRAEESYTQGIDSVPrietsrNCLRAlmlcYSNRAATRMALGRMREAIADCTMASSIDSNFLKV 688
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDP------DNPEA----FALLGEILLQLGDLDEAIVLLHEALELDPDEPEA 74

                         90       100
                 ....*....|....*....|....*.
gi 30684104  689 QVRAANCYLSLGEIEDASRYFKKCLQ 714
Cdd:COG4783   75 RLNLGLALLKAGDYDEALALLEKALK 100
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 836-978 4.83e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.49  E-value: 4.83e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  836 FYMGKLEEAIASLEkqeQLLSATkregnktlessiPLAATIRELLrlkaaGNEAFQSGRHTEAVEHYTAALA---CNVES 912
Cdd:COG4783   15 LLAGDYDEAEALLE---KALELD------------PDNPEAFALL-----GEILLQLGDLDEAIVLLHEALEldpDEPEA 74

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30684104  913 RpftavcfCNRAAAYKALGQFSDAIADCSLAIALDQNYSKAISRRATLFEMIRDYGQAASDMERYV 978
Cdd:COG4783   75 R-------LNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 1024-1126 5.57e-06

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 49.95  E-value: 5.57e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1024 DMYLVLGVVPSCSASDIRKAYRKAALKHHPDkagqsltrnetkderLWKEIGEEvrkdtDKlFKMIGEAYAVLSDPAKRS 1103
Cdd:PRK14296    5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPD---------------LNKSPDAH-----DK-MVEINEAADVLLDKDKRK 63

                          90       100
                  ....*....|....*....|...
gi 30684104  1104 QYDleEEMHNSqkrRDGSSTSGA 1126
Cdd:PRK14296   64 QYD--QFGHAA---FDGSSGFSS 81
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 987-1106 6.11e-06

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 50.03  E-value: 6.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  987 EKTSGTLDRSTSMSNDIRQARIRLseLEEKSRKENSLDMYLVLGVVP---SCSASDIRKAYRKAALKHHPDKAGQSLTrn 1063
Cdd:COG5269    9 EKPVGELARIHSEYFKGRNVLNLY--TREDFKNWKKVDLYALLGLSKyrtKAIPPQILKAHKKKVYKYHPDKTAAGGN-- 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 30684104 1064 etkderlwkeigeevrKDTDKLFKMIGEAYAVLSDPAKRSQYD 1106
Cdd:COG5269   85 ----------------KGCDEFFKLIQKAREVLGDRKLRLQYD 111
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 593-714 8.22e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.54  E-value: 8.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  593 KARIEKDVSNAaqeacEKWRLRGNNAYKIGDLSRAEESYTQGIDSVPR-IETsrnclralmlcYSNRAATRMALGRMREA 671
Cdd:COG4235    7 RQALAANPNDA-----EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDnADA-----------LLDLAEALLAAGDTEEA 70

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 30684104  672 IADCTMASSIDSNFLKVQVRAANCYLSLGEIEDASRYFKKCLQ 714
Cdd:COG4235   71 EELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA 113
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 619-801 8.76e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.96  E-value: 8.76e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  619 YKIGDLSRAEESYTQGIDSVPRietSRNCLRALMLCYS---------------------------NRAATRMALGRMREA 671
Cdd:COG2956   87 LKAGLLDRAEELLEKLLELDPD---DAEALRLLAEIYEqegdwekaievlerllklgpenahaycELAELYLEQGDYDEA 163

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  672 IADCTMASSIDSNFLKVQVRAANCYLSLGEIEDASRYFKKCLQsgsdicvdrkiivEASEGLQKAQRVSECMHEAGrrlq 751
Cdd:COG2956  164 IEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALE-------------QDPDYLPALPRLAELYEKLG---- 226

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 30684104  752 lrtltDAEKALEILEDSLLISTYSEKLLTMkGEALLMLEKYDAAIKLCEQ 801
Cdd:COG2956  227 -----DPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLER 270
PHA03102 PHA03102
Small T antigen; Reviewed
 1029-1078 1.21e-05

Small T antigen; Reviewed


Pssm-ID: 222986 [Multi-domain]  Cd Length: 153  Bit Score: 46.59  E-value: 1.21e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 30684104  1029 LGVVPSC--SASDIRKAYRKAALKHHPDKAGqsltrNETKDER---LWKEIGEEV 1078
Cdd:PHA03102   11 LGLPRSAwgNLPLMRKAYLRKCLEFHPDKGG-----DEEKMKElntLYKKFRESV 60
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 917-950 2.78e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.05  E-value: 2.78e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 30684104     917 AVCFCNRAAAYKALGQFSDAIADCSLAIALDQNY 950
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK14288 PRK14288
molecular chaperone DnaJ;
1023-1106 3.05e-05

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 47.76  E-value: 3.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  1023 LDMYLVLGVVPSCSASDIRKAYRKAALKHHPDK-AGQsltrnetkderlwkeigeevrKDTDKLFKMIGEAYAVLSDPAK 1101
Cdd:PRK14288    3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRnAGD---------------------KEAEEKFKLINEAYGVLSDEKK 61


                  ....*
gi 30684104  1102 RSQYD 1106
Cdd:PRK14288   62 RALYD 66
TPR_1 pfam00515
Tetratricopeptide repeat;
917-950 3.21e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.02  E-value: 3.21e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 30684104    917 AVCFCNRAAAYKALGQFSDAIADCSLAIALDQNY 950
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
575-714 3.37e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.45  E-value: 3.37e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  575 ERDPLTRLHKPINNSVMEKARIEKDVSNAAQEACEKWRL---RGNNAYKIGDLSRAEESYTQGIDSVPRietsrnclraL 651
Cdd:COG4785   37 LAIALADLALALAAAALAAAALAAERIDRALALPDLAQLyyeRGVAYDSLGDYDLAIADFDQALELDPD----------L 106

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 30684104  652 MLCYSNRAATRMALGRMREAIADCTMASSIDSNFLKVQVRAANCYLSLGEIEDASRYFKKCLQ 714
Cdd:COG4785  107 AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALE 169
djlA PRK09430
co-chaperone DjlA;
1016-1055 3.70e-05

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 46.73  E-value: 3.70e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 30684104  1016 KSRKENSL-DMYLVLGVVPSCSASDIRKAYRKAALKHHPDK 1055
Cdd:PRK09430  192 QAQRGPTLeDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDK 232
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 760-918 4.83e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.23  E-value: 4.83e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  760 KALEILEDSLLISTYSEKLLTMKGEALLMLEKYDAAIKLCEQTVDLAGKNSppdshdtpkDINFRIWQCHlmlkssFYMG 839
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNA---------DALLDLAEAL------LAAG 65

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30684104  840 KLEEAIASLEKqeqllsATKREgnktlessiPLAATIRELLrlkaaGNEAFQSGRHTEAVEHYTAALACNVESRPFTAV 918
Cdd:COG4235   66 DTEEAEELLER------ALALD---------PDNPEALYLL-----GLAAFQQGDYAEAIAAWQKLLALLPADAPARLL 124
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 647-856 1.01e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.52  E-value: 1.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  647 CLRALMLCYSNRAATRMALGRMREAIADCTMASSIDSNFLKVQVRAANCYLSLGEIEDASRYFKKCLQSGSDicvdrkiI 726
Cdd:COG3914   73 ALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD-------F 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  727 VEAseglqkAQRVSECMHEAGRRLQLRTLtdAEKALEILEDSLlistyseKLLTMKGEALLMLEKYDAAIKLCEQTVDLA 806
Cdd:COG3914  146 AEA------YLNLGEALRRLGRLEEAIAA--LRRALELDPDNA-------EALNNLGNALQDLGRLEEAIAAYRRALELD 210

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 30684104  807 gknsppdshdtPKDINFRIWQCHLMLKSSFYMG--KLEEAIASLEKQEQLLS 856
Cdd:COG3914  211 -----------PDNADAHSNLLFALRQACDWEVydRFEELLAALARGPSELS 251
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 658-809 1.11e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.26  E-value: 1.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  658 RAATRMALGRMREAIADCTMASSIDSNFLKVQVRAANCYLSLGEIEDASRYFKKCLQSGSDIcvdrkiiVEASEGLqkaq 737
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE-------PEARLNL---- 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30684104  738 rvSECMHEAGrrlqlrtltDAEKALEILEDSLLISTYSEKLLTMKGEALLMLEKYDAAIKLCEQTVDLAGKN 809
Cdd:COG4783   79 --GLALLKAG---------DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 745-907 1.35e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.26  E-value: 1.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  745 EAGRRLQLRTLTDAEKALEILEDSLLISTYSEKLLTMKGEALLMLEKYDAAIKLCEQTVDLAgknsppdshdtPKDINFR 824
Cdd:COG4783    7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD-----------PDEPEAR 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  825 IWQCHLMLKssfyMGKLEEAIASLEKqeqllsATKREgnktlessiPLAATIRELLrlkaaGNEAFQSGRHTEAVEHYTA 904
Cdd:COG4783   76 LNLGLALLK----AGDYDEALALLEK------ALKLD---------PEHPEAYLRL-----ARAYRALGRPDEAIAALEK 131


                 ...
gi 30684104  905 ALA 907
Cdd:COG4783  132 ALE 134
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 611-714 1.45e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.26  E-value: 1.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  611 WRLRGNNAYKIGDLSRAEESYTQGIDSVPRIETSRNclralmlcysNRAATRMALGRMREAIADCTMASSIDSNFLKVQV 690
Cdd:COG4783   41 FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARL----------NLGLALLKAGDYDEALALLEKALKLDPEHPEAYL 110

                         90       100
                 ....*....|....*....|....
gi 30684104  691 RAANCYLSLGEIEDASRYFKKCLQ 714
Cdd:COG4783  111 RLARAYRALGRPDEAIAALEKALE 134
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
872-980 2.01e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 44.14  E-value: 2.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  872 LAATIRELLRLKAAGNEAFQSGRHTEAVEHYTAALACN--------VESRPFTAVCFCNRAAAYKALGQFSDAIADCSLA 943
Cdd:COG4785   20 SKAAILLAALLFAAVLALAIALADLALALAAAALAAAAlaaeridrALALPDLAQLYYERGVAYDSLGDYDLAIADFDQA 99

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 30684104  944 IALDQNYSKAISRRATLFEMIRDYGQAASDMERYVNI 980
Cdd:COG4785  100 LELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALEL 136
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 886-981 2.03e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.30  E-value: 2.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  886 GNEAFQSGRHTEAVEHYTAALacnvESRPFTAVCFCNRAAAYKALGQFSDAIADCSLAIALDQNYSKAISRRATLFEMIR 965
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKAL----RLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99

                         90
                 ....*....|....*.
gi 30684104  966 DYGQAASDMERYVNIL 981
Cdd:COG4235  100 DYAEAIAAWQKLLALL 115
PHA02624 PHA02624
large T antigen; Provisional
 1017-1080 2.25e-04

large T antigen; Provisional


Pssm-ID: 222912 [Multi-domain]  Cd Length: 647  Bit Score: 45.36  E-value: 2.25e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30684104  1017 SRKENSLDMYLvLGVVPSC--SASDIRKAYRKAALKHHPDKAGqsltrNETKDER---LWKEIGEEVRK 1080
Cdd:PHA02624    6 SREESKELMDL-LGLPMAAwgNLPLMRKAYLRKCKEYHPDKGG-----DEEKMKRlnsLYKKLQEGVKS 68
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 592-715 3.13e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.64  E-value: 3.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  592 EKARIEKDVSNAAQEACEKWRLRGNNAYKIGDLSRAEESYTQGIDSVPrietsrNCLRAlmlcYSNRAATRMALGRMREA 671
Cdd:COG5010   38 KEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP------NNPEL----YYNLALLYSRSGDKDEA 107

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 30684104  672 IADCTMASSIDSNFLKVQVRAANCYLSLGEIEDASRYFKKCLQS 715
Cdd:COG5010  108 KEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
886-977 5.79e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 42.59  E-value: 5.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  886 GNEAFQSGRHTEAVEHYTAALacnvESRPFTAVCFCNRAAAYKALGQFSDAIADCSLAIALDQNYSKAISRRAtLFEMIR 965
Cdd:COG4785  114 GLAYLLLGDYDAALEDFDRAL----ELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLY-LAERKL 188

                         90
                 ....*....|..
gi 30684104  966 DYGQAASDMERY 977
Cdd:COG4785  189 DPEKALALLLED 200
TPR_12 pfam13424
Tetratricopeptide repeat;
890-947 6.72e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 39.29  E-value: 6.72e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30684104    890 FQSGRHTEAVEHYTAALACNVES----RPFTAVCFCNRAAAYKALGQFSDAIA--DCSLAIALD 947
Cdd:pfam13424   14 RRLGRYDEALELLEKALEIARRLlgpdHPLTATTLLNLGRLYLELGRYEEALEllERALALAEK 77
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 897-976 8.00e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.76  E-value: 8.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  897 EAVEHYTAALACNvesrPFTAVCFCNRAAAYKALGQFSDAIADCSLAIALDQNYSKAISRRATLFEMIRDYGQAASDMER 976
Cdd:COG4235    1 EAIARLRQALAAN----PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLER 76
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 596-811 8.41e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.53  E-value: 8.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104    596 IEKDVSNAAQEACEKWRLRGNNAYKIGDLSRAEESYTQGIDSVPRIETSRNCLRALMLCYSNRAATRMALGRmreaiadc 675
Cdd:TIGR02917  589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR-------- 660

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104    676 tmASSIDSNFLKVQVRAANCYLSLGEIEDA---SRYFKKCLQSGS-------DICVDRKIIVEA----SEGLQKAQRVSE 741
Cdd:TIGR02917  661 --ALELKPDNTEAQIGLAQLLLAAKRTESAkkiAKSLQKQHPKAAlgfelegDLYLRQKDYPAAiqayRKALKRAPSSQN 738

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30684104    742 CM--HEAGRRLQlrtltDAEKALEILEDSLLISTYSEKLLTMKGEALLMLEKYDAAIKLCEQTVDLAGKNSP 811
Cdd:TIGR02917  739 AIklHRALLASG-----NTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAV 805
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 752-854 1.15e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.56  E-value: 1.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  752 LRTLTDAEKALEILEDSLLISTYSEKLLTMKGEALLMLEKYDAAIKLCEQTVDLAGKNSppdshdtpkDINFRIWQCHLM 831
Cdd:COG4783   48 LLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHP---------EAYLRLARAYRA 118

                         90       100
                 ....*....|....*....|...
gi 30684104  832 LkssfymGKLEEAIASLEKQEQL 854
Cdd:COG4783  119 L------GRPDEAIAALEKALEL 135
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 836-947 4.43e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.17  E-value: 4.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684104  836 FYMGKLEEAIASLEKQEQLLsatkregnktlessiPLAATIRELLrlkaaGNEAFQSGRHTEAVEHYTAALacnvESRPF 915
Cdd:COG5010   65 NKLGDFEESLALLEQALQLD---------------PNNPELYYNL-----ALLYSRSGDKDEAKEYYEKAL----ALSPD 120

                         90       100       110
                 ....*....|....*....|....*....|..
gi 30684104  916 TAVCFCNRAAAYKALGQFSDAIADCSLAIALD 947
Cdd:COG5010  121 NPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 884-951 6.05e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.55  E-value: 6.05e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30684104    884 AAGNEAFQSGRHTEAVEHYTAALACNVESrPFTAVCFCNRAAAYKALGQFSDAIADCSLAIALDQNYS 951
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARFPES-PDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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