U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    DEAD box RNA helicase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819825, updated on 18-Sep-2024

    Summary

    Official Full Name
    DEAD box RNA helicase family protein
    Primary source
    TAIR:AT3G06480
    Locus tag
    AT3G06480
    See related
    Araport:AT3G06480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24P17.2; F24P17_2
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (1985338..1990245, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ubiquitin family protein Neighboring gene GNS1/SUR4 membrane protein family Neighboring gene GNS1/SUR4 membrane protein family Neighboring gene pyruvate dehydrogenase kinase Neighboring gene myb domain protein 108

    Interactions

    General gene information

    NM_111523.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA helicase activity  
    enables nucleic acid binding  
    Component Evidence Code Pubs
    located_in nucleus  
    located_in plant-type vacuole PubMed 

    General protein information

    Preferred Names
    DEAD box RNA helicase family protein
    NP_187299.1
    • DEAD box RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase 1 (TAIR:AT3G01540.4); Has 132761 Blast hits to 82344 proteins in 3707 species: Archae - 865; Bacteria - 47475; Metazoa - 37917; Fungi - 12444; Plants - 11781; Viruses - 886; Other Eukaryotes - 21393 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1985338..1990245 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337659.1 → NP_001327723.1  DEAD box RNA helicase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LT69, A0A7G2EKI5
      Conserved Domains (2) summary
      PTZ00110
      Location:402 → 752
      PTZ00110; helicase; Provisional
      pfam00397
      Location:22 → 52
      WW; WW domain
    2. NM_111523.3 → NP_187299.1  DEAD box RNA helicase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187299.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SQV1
      UniProtKB/TrEMBL
      A0A178VH14, A0A5S9X9N1
      Conserved Domains (2) summary
      PTZ00110
      Location:402 → 814
      PTZ00110; helicase; Provisional
      pfam00397
      Location:22 → 52
      WW; WW domain
    External link. Please review our privacy policy.