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P-loop containing nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825026, updated on 18-Sep-2024

Summary

Official Full Name
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Primary source
TAIR:AT3G58570
Locus tag
AT3G58570
See related
Araport:AT3G58570
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (21656484..21660812)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene DNAse I-like superfamily protein Neighboring gene DNAse I-like superfamily protein Neighboring gene PPR containing protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Adaptin ear-binding coat-associated protein 1 NECAP-1

Interactions

General gene information

NM_115719.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast  

General protein information

Preferred Names
P-loop containing nucleoside triphosphate hydrolases superfamily protein
NP_191416.1
  • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G42520.1); Has 86488 Blast hits to 59724 proteins in 3531 species: Archae - 886; Bacteria - 35070; Metazoa - 23291; Fungi - 6787; Plants - 8100; Viruses - 385; Other Eukaryotes - 11969 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21656484..21660812
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115719.3 → NP_191416.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191416.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M2F9
    UniProtKB/TrEMBL
    A0A178V7W0, A0A5S9XMP8
    Conserved Domains (2) summary
    cd18787
    Location:373 → 509
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd17967
    Location:147 → 367
    DEADc_DDX3_DDX4; DEAD-box helicase domain of ATP-dependent RNA helicases DDX3 and DDX4
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