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    zinc knuckle (CCHC-type) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821018, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zinc knuckle (CCHC-type) family protein
    Primary source
    TAIR:AT3G02820
    Locus tag
    AT3G02820
    See related
    Araport:AT3G02820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13E7.24; F13E7_24
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (611490..613522)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Tyrosine phosphatase family protein Neighboring gene Protein kinase superfamily protein Neighboring gene zinc finger protein 1 Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_111150.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc knuckle (CCHC-type) family protein
    NP_186931.2
    • zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: cell cycle, replication fork protection, response to DNA damage stimulus; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Replication fork protection component Swi3 (InterPro:IPR012923), Zinc finger, CCHC-type (InterPro:IPR001878); Has 415 Blast hits to 415 proteins in 134 species: Archae - 0; Bacteria - 4; Metazoa - 156; Fungi - 94; Plants - 93; Viruses - 28; Other Eukaryotes - 40 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      611490..613522
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337435.1 → NP_001327085.1  zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LR82, A0A5S9X943, A0A654F3L0
      Conserved Domains (3) summary
      PTZ00368
      Location:11 → 46
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      pfam00098
      Location:24 → 40
      zf-CCHC; Zinc knuckle
      pfam07962
      Location:90 → 172
      Swi3; Replication Fork Protection Component Swi3

    2. NM_111150.4 → NP_186931.2  zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186931.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VEK3, A0A384LIU0, A0A5S9X943, A0A654F3L0, Q8GW91
      Conserved Domains (2) summary
      pfam00098
      Location:7 → 23
      zf-CCHC; Zinc knuckle
      pfam07962
      Location:73 → 155
      Swi3; Replication Fork Protection Component Swi3
    Nucleotide Protein
    Heading Accession and Version

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