LOCUS NM_111150 1084 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana zinc knuckle (CCHC-type) family protein
(AT3G02820), mRNA.
ACCESSION NM_111150
VERSION NM_111150.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1084)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 1084)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1084)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1084)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
On Sep 12, 2016 this sequence version replaced NM_111150.3.
FEATURES Location/Qualifiers
source 1..1084
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene 1..1084
/locus_tag="AT3G02820"
/gene_synonym="F13E7.24; F13E7_24"
/db_xref="Araport:AT3G02820"
/db_xref="GeneID:821018"
/db_xref="TAIR:AT3G02820"
CDS 50..898
/locus_tag="AT3G02820"
/gene_synonym="F13E7.24; F13E7_24"
/inference="Similar to RNA sequence,
EST:INSD:EL098059.1,INSD:EL984232.1,INSD:EL258490.1,
INSD:EL087934.1,INSD:ES212096.1,INSD:ES198681.1,
INSD:EL222205.1,INSD:EL967615.1,INSD:ES003493.1,
INSD:EH946729.1,INSD:EL138880.1,INSD:ES117249.1,
INSD:EL099233.1,INSD:ES174261.1,INSD:EL324549.1,
INSD:EL987084.1,INSD:DR288720.1,INSD:AU239885.1,
INSD:DR379326.1,INSD:EH813245.1,INSD:ES003514.1,
INSD:DR288721.1,INSD:ES052052.1,INSD:ES059559.1,
INSD:Z18470.1,INSD:EL213282.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK119002.1,INSD:BT025722.1"
/note="zinc knuckle (CCHC-type) family protein; FUNCTIONS
IN: zinc ion binding, nucleic acid binding; INVOLVED IN:
cell cycle, replication fork protection, response to DNA
damage stimulus; LOCATED IN: nucleus, chloroplast;
EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: Replication
fork protection component Swi3 (InterPro:IPR012923), Zinc
finger, CCHC-type (InterPro:IPR001878); Has 415 Blast hits
to 415 proteins in 134 species: Archae - 0; Bacteria - 4;
Metazoa - 156; Fungi - 94; Plants - 93; Viruses - 28;
Other Eukaryotes - 40 (source: NCBI BLink)."
/codon_start=1
/product="zinc knuckle (CCHC-type) family protein"
/protein_id="NP_186931.2"
/db_xref="GeneID:821018"
/db_xref="TAIR:AT3G02820"
/db_xref="Araport:AT3G02820"
/translation="MESAPTGCFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPN
NEFQRSSSKSGTSIAPAPKVTKTRVQRPKLTPELLLSEDGLGYVLRYFPKSFKYRGRG
KEVSDLGNLIRLYSEWHTHLLPYYSFDHFVHKVQQVASTKRVKNCINELRERVASGVD
PNKLYEKQEENTVPSDDQDMDQPSHDEENIPSKSVDADTNADAFEDSMLNEIFDNASK
LPSDEQNMDKSSELTEEQRARMEANRLKAMEKAQNISEEQRVRMEANRLKALERAKAR
LQPNQD"
ORIGIN
1 gataaaagac ctaagaggga gaaagagaga tcgaagagtg aaatctgaaa tggaatcagc
61 tccgacggga tgcttcaagt gtggtcgtcc cggtcattgg tctcgtgatt gtccatcatc
121 ggctccggtc gccggcaata attccgtttc ttcttcttcc gctccatctc aaatccctaa
181 taatgaattt cagagatcct ccagtaaaag tggaacctca atagctcctg ctcctaaagt
241 gacgaagacg agagttcaaa ggcccaagct aactcctgaa ttgttactct ctgaggatgg
301 tctcggctat gttcttcgct atttccctaa atccttcaag tatcgtggcc gaggcaaaga
361 ggtgagcgat ttggggaatt tgatacggtt gtacagtgag tggcacactc atttgctacc
421 ttactattcc tttgatcact ttgtgcataa agttcaacaa gtcgcttcta ctaagcgtgt
481 taagaattgt ataaatgaac tgcgagaaag ggttgccagt ggagttgatc caaacaagtt
541 atacgaaaag caggaagaaa atactgttcc ttctgatgat caagatatgg atcagccaag
601 tcatgacgaa gagaacatac catcaaagag cgttgatgct gatacaaatg ctgatgcttt
661 tgaagacagt atgttgaatg agatatttga taatgcttca aagttaccga gcgatgaaca
721 aaacatggat aaaagcagtg aactgacaga agagcaaaga gcacgtatgg aagctaatag
781 attgaaggca atggagaaag ctcagaacat ttccgaggaa cagagagtac gtatggaagc
841 taataggcta aaagctctcg aaagagccaa agcaaggctc caaccaaatc aagattagac
901 tagagatgtt caatttgaat tttggattga aaaatttgtg cttttgaatg tttcaattag
961 ttatctaata gtaacaaatg tgtgtccgaa actagaacat atgtatggat gtctggtcgt
1021 gtgttagttt cggttgtgga tccatcaaac ccaatattat ggaccgtaat ttgttccaac
1081 ccaa
//