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Arabidopsis thaliana zinc knuckle (CCHC-type) family protein (AT3G02820), mRNA

NCBI Reference Sequence: NM_111150.4

FASTA Graphics 

LOCUS       NM_111150               1084 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana zinc knuckle (CCHC-type) family protein
            (AT3G02820), mRNA.
ACCESSION   NM_111150
VERSION     NM_111150.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1084)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 1084)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1084)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1084)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On Sep 12, 2016 this sequence version replaced NM_111150.3.
FEATURES             Location/Qualifiers
     source          1..1084
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..1084
                     /locus_tag="AT3G02820"
                     /gene_synonym="F13E7.24; F13E7_24"
                     /db_xref="Araport:AT3G02820"
                     /db_xref="GeneID:821018"
                     /db_xref="TAIR:AT3G02820"
     CDS             50..898
                     /locus_tag="AT3G02820"
                     /gene_synonym="F13E7.24; F13E7_24"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EL098059.1,INSD:EL984232.1,INSD:EL258490.1,
                     INSD:EL087934.1,INSD:ES212096.1,INSD:ES198681.1,
                     INSD:EL222205.1,INSD:EL967615.1,INSD:ES003493.1,
                     INSD:EH946729.1,INSD:EL138880.1,INSD:ES117249.1,
                     INSD:EL099233.1,INSD:ES174261.1,INSD:EL324549.1,
                     INSD:EL987084.1,INSD:DR288720.1,INSD:AU239885.1,
                     INSD:DR379326.1,INSD:EH813245.1,INSD:ES003514.1,
                     INSD:DR288721.1,INSD:ES052052.1,INSD:ES059559.1,
                     INSD:Z18470.1,INSD:EL213282.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:AK119002.1,INSD:BT025722.1"
                     /note="zinc knuckle (CCHC-type) family protein; FUNCTIONS
                     IN: zinc ion binding, nucleic acid binding; INVOLVED IN:
                     cell cycle, replication fork protection, response to DNA
                     damage stimulus; LOCATED IN: nucleus, chloroplast;
                     EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15
                     growth stages; CONTAINS InterPro DOMAIN/s: Replication
                     fork protection component Swi3 (InterPro:IPR012923), Zinc
                     finger, CCHC-type (InterPro:IPR001878); Has 415 Blast hits
                     to 415 proteins in 134 species: Archae - 0; Bacteria - 4;
                     Metazoa - 156; Fungi - 94; Plants - 93; Viruses - 28;
                     Other Eukaryotes - 40 (source: NCBI BLink)."
                     /codon_start=1
                     /product="zinc knuckle (CCHC-type) family protein"
                     /protein_id="NP_186931.2"
                     /db_xref="GeneID:821018"
                     /db_xref="TAIR:AT3G02820"
                     /db_xref="Araport:AT3G02820"
                     /translation="MESAPTGCFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPN
                     NEFQRSSSKSGTSIAPAPKVTKTRVQRPKLTPELLLSEDGLGYVLRYFPKSFKYRGRG
                     KEVSDLGNLIRLYSEWHTHLLPYYSFDHFVHKVQQVASTKRVKNCINELRERVASGVD
                     PNKLYEKQEENTVPSDDQDMDQPSHDEENIPSKSVDADTNADAFEDSMLNEIFDNASK
                     LPSDEQNMDKSSELTEEQRARMEANRLKAMEKAQNISEEQRVRMEANRLKALERAKAR
                     LQPNQD"
ORIGIN      
        1 gataaaagac ctaagaggga gaaagagaga tcgaagagtg aaatctgaaa tggaatcagc
       61 tccgacggga tgcttcaagt gtggtcgtcc cggtcattgg tctcgtgatt gtccatcatc
      121 ggctccggtc gccggcaata attccgtttc ttcttcttcc gctccatctc aaatccctaa
      181 taatgaattt cagagatcct ccagtaaaag tggaacctca atagctcctg ctcctaaagt
      241 gacgaagacg agagttcaaa ggcccaagct aactcctgaa ttgttactct ctgaggatgg
      301 tctcggctat gttcttcgct atttccctaa atccttcaag tatcgtggcc gaggcaaaga
      361 ggtgagcgat ttggggaatt tgatacggtt gtacagtgag tggcacactc atttgctacc
      421 ttactattcc tttgatcact ttgtgcataa agttcaacaa gtcgcttcta ctaagcgtgt
      481 taagaattgt ataaatgaac tgcgagaaag ggttgccagt ggagttgatc caaacaagtt
      541 atacgaaaag caggaagaaa atactgttcc ttctgatgat caagatatgg atcagccaag
      601 tcatgacgaa gagaacatac catcaaagag cgttgatgct gatacaaatg ctgatgcttt
      661 tgaagacagt atgttgaatg agatatttga taatgcttca aagttaccga gcgatgaaca
      721 aaacatggat aaaagcagtg aactgacaga agagcaaaga gcacgtatgg aagctaatag
      781 attgaaggca atggagaaag ctcagaacat ttccgaggaa cagagagtac gtatggaagc
      841 taataggcta aaagctctcg aaagagccaa agcaaggctc caaccaaatc aagattagac
      901 tagagatgtt caatttgaat tttggattga aaaatttgtg cttttgaatg tttcaattag
      961 ttatctaata gtaacaaatg tgtgtccgaa actagaacat atgtatggat gtctggtcgt
     1021 gtgttagttt cggttgtgga tccatcaaac ccaatattat ggaccgtaat ttgttccaac
     1081 ccaa
//
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