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    ARPC1A actin-related protein C1A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817641, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARPC1A
    Official Full Name
    actin-related protein C1A
    Primary source
    TAIR:AT2G30910
    Locus tag
    AT2G30910
    See related
    Araport:AT2G30910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ACTIN-RELATED PROTEIN C1; actin-related protein C1A; ARPC1; F7F1.12; F7F1_12
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    Genomic context

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    See ARPC1A in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    16
    Sequence:
    Chromosome: 2; NC_003071.7 (13152789..13157107)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase PHI 10 Neighboring gene Pleckstrin homology (PH) domain-containing protein Neighboring gene Cytochrome b561/ferric reductase transmembrane protein family Neighboring gene TRICHOME BIREFRINGENCE-LIKE 43 Neighboring gene coenzyme Q 3 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Breaking the WAVE complex: the point of Arabidopsis trichomes. Szymanski DB. Curr Opin Plant Biol, 2005 Feb. PMID 15653407
    2. The actin cytoskeleton is required to elaborate and maintain spatial patterning during trichome cell morphogenesis in Arabidopsis thaliana. Mathur J, et al. Development, 1999 Dec. PMID 10572033
    3. The role of Arabidopsis SCAR genes in ARP2-ARP3-dependent cell morphogenesis. Uhrig JF, et al. Development, 2007 Mar. PMID 17267444
    4. Molecular dissection of plant cytokinesis and phragmoplast structure: a survey of GFP-tagged proteins. Van Damme D, et al. Plant J, 2004 Nov. PMID 15469496
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001202716.1
    NM_128643.4
    NM_201841.1

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in Arp2/3 complex-mediated actin nucleation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within actin filament organization TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Arp2/3 protein complex TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in cytoplasm HDA PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    actin-related protein C1A
    NP_001189645.1
    • actin-related protein C1A (ARPC1A); FUNCTIONS IN: actin binding, nucleotide binding; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex, nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: actin-related protein C1B (TAIR:AT2G31300.1).
    NP_180648.1
    • actin-related protein C1A (ARPC1A); FUNCTIONS IN: actin binding, nucleotide binding; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex, nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: actin-related protein C1B (TAIR:AT2G31300.1); Has 4172 Blast hits to 3036 proteins in 305 species: Archae - 4; Bacteria - 871; Metazoa - 1539; Fungi - 831; Plants - 451; Viruses - 0; Other Eukaryotes - 476 (source: NCBI BLink).
    NP_973570.1
    • actin-related protein C1A (ARPC1A); FUNCTIONS IN: actin binding, nucleotide binding; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex, nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: actin-related protein C1B (TAIR:AT2G31300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13152789..13157107
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202716.1 → NP_001189645.1  actin-related protein C1A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189645.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80856
      UniProtKB/TrEMBL
      A0A5S9X2S8
      Conserved Domains (3) summary
      COG2319
      Location:8 → 371
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:13 → 53
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:48 → 282
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. NM_128643.4 → NP_180648.1  actin-related protein C1A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180648.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80856
      UniProtKB/TrEMBL
      A0A5S9X2S8
      Conserved Domains (3) summary
      COG2319
      Location:8 → 371
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:13 → 53
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:48 → 282
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. NM_201841.1 → NP_973570.1  actin-related protein C1A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973570.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X2S8, F4IPT5
      Conserved Domains (3) summary
      COG2319
      Location:8 → 371
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:13 → 53
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:48 → 282
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80856.1

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