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    CA1 carbonic anhydrase 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821134, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CA1
    Official Full Name
    carbonic anhydrase 1
    Primary source
    TAIR:AT3G01500
    Locus tag
    AT3G01500
    See related
    Araport:AT3G01500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3; ATBCA1; ATSABP3; BETA CARBONIC ANHYDRASE 1; carbonic anhydrase 1; F4P13.5; F4P13_5; SABP3; SALICYLIC ACID-BINDING PROTEIN 3
    Summary
    Encodes a putative beta-carbonic anhydrase betaCA1. Together with betaCA4 (At1g70410) regulates CO2-controlled stomatal movements in guard cells.
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    Genomic context

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    See CA1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (194426..198664, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene homeobox 1 Neighboring gene cyclophilin 38 Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Thiol Redox Regulation of Plant β-Carbonic Anhydrase. Dreyer A, et al. Biomolecules, 2020 Jul 30. PMID 32751472, Free PMC Article
    2. Reduction of plastid-localized carbonic anhydrase activity results in reduced Arabidopsis seedling survivorship. Ferreira FJ, et al. Plant Physiol, 2008 Jun. PMID 18434607, Free PMC Article
    3. S-nitrosylation of AtSABP3 antagonizes the expression of plant immunity. Wang YQ, et al. J Biol Chem, 2009 Jan 23. PMID 19017644
    4. Potyviral Gene-Silencing Suppressor HCPro Interacts with Salicylic Acid (SA)-Binding Protein 3 to Weaken SA-Mediated Defense Responses. Poque S, et al. Mol Plant Microbe Interact, 2018 Jan. PMID 29090655
    5. Carbonic anhydrases are upstream regulators of CO2-controlled stomatal movements in guard cells. Hu H, et al. Nat Cell Biol, 2010 Jan. PMID 20010812, Free PMC Article

    See all (33) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Thiol Redox Regulation of Plant beta-Carbonic Anhydrase.
      Title: Thiol Redox Regulation of Plant β-Carbonic Anhydrase.
    2. Carbonic anhydrases CA1 and CA4 function in atmospheric CO2-modulated disease resistance.
      Title: Carbonic anhydrases CA1 and CA4 function in atmospheric CO(2)-modulated disease resistance.
    3. the direct in vivo interaction between Turnip mosaic virus (TuMV) HCPro and the Arabidopsis homologue of SABP3, AtCA1, is reported.
      Title: Potyviral Gene-Silencing Suppressor HCPro Interacts with Salicylic Acid (SA)-Binding Protein 3 to Weaken SA-Mediated Defense Responses.
    4. Trole of AT3G01500 in the carbon dioxide mediated control of stomatal movements and its specific location in native guard cell chloroplasts
      Title: Distinct Cellular Locations of Carbonic Anhydrases Mediate Carbon Dioxide Control of Stomatal Movements.
    5. Inhibition of AtSBAP3 CA function by S-nitrosylation could contribute to a negative feedback loop that modulates the plant defense response. [AtSABP3]
      Title: S-nitrosylation of AtSABP3 antagonizes the expression of plant immunity.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001337342.1
    NM_111016.4
    NM_180159.2
    NM_180160.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbonate dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables carbonate dehydratase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbon utilization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within defense response to fungus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of stomatal complex development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in photosynthesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of stomatal movement IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to carbon dioxide IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast HDA PubMed 
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in stromule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    carbonic anhydrase 1
    NP_186799.2
    • carbonic anhydrase 1 (CA1); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: in 6 processes; LOCATED IN: in 8 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase 2 (TAIR:AT5G14740.1); Has 5061 Blast hits to 5044 proteins in 1509 species: Archae - 36; Bacteria - 3893; Metazoa - 59; Fungi - 207; Plants - 363; Viruses - 0; Other Eukaryotes - 503 (source: NCBI BLink).
    NP_850490.1
    • carbonic anhydrase 1 (CA1); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: in 6 processes; LOCATED IN: in 8 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase 2 (TAIR:AT5G14740.1); Has 5133 Blast hits to 5116 proteins in 1526 species: Archae - 36; Bacteria - 3970; Metazoa - 59; Fungi - 207; Plants - 361; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink).
    NP_850491.1
    • carbonic anhydrase 1 (CA1); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase 2 (TAIR:AT5G14740.1); Has 5138 Blast hits to 5121 proteins in 1526 species: Archae - 36; Bacteria - 3970; Metazoa - 59; Fungi - 207; Plants - 363; Viruses - 0; Other Eukaryotes - 503 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      194426..198664 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111016.4 → NP_186799.2  carbonic anhydrase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186799.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P27140, Q0WWA9, Q56WK1, Q8RWW2, Q93VR8
      UniProtKB/TrEMBL
      A0A178VK19, A0A5S9X867, C0Z272
      Conserved Domains (1) summary
      PLN03014
      Location:1 → 347
      PLN03014; carbonic anhydrase

    2. NM_001337342.1 → NP_001326777.1  carbonic anhydrase 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQB3, Q56X90

    3. NM_180160.4 → NP_850491.1  carbonic anhydrase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850491.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VLF2, C0Z272
      Conserved Domains (1) summary
      PLN03014
      Location:1 → 336
      PLN03014; carbonic anhydrase

    4. NM_180159.2 → NP_850490.1  carbonic anhydrase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850490.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q56X90
      Conserved Domains (1) summary
      cl00391
      Location:1 → 251
      beta_CA; Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P27140.2

    Gene LinkOut

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