U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CMBL carboxymethylenebutenolidase homolog [ Bos taurus (domestic cattle) ]

    Gene ID: 516405, updated on 28-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CMBLprovided by VGNC
    Official Full Name
    carboxymethylenebutenolidase homologprovided by VGNC
    Primary source
    VGNC:VGNC:27477
    See related
    BGD:BT20269; Ensembl:ENSBTAG00000010801
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CMBL in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 20 NC_037347.1 (62947984..62973176)

    Chromosome 20 - NC_037347.1Genomic Context describing neighboring genes Neighboring gene membrane associated ring-CH-type finger 6 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene microRNA mir-6530 Neighboring gene chaperonin containing TCP1 subunit 5 Neighboring gene uncharacterized LOC112443044 Neighboring gene ATP synthase c subunit lysine N-methyltransferase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037347.1 Chromosome 20 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    carboxymethylenebutenolidase homolog
    NP_001179912.1
    XP_005221705.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192983.3 → NP_001179912.1  carboxymethylenebutenolidase homolog

      See identical proteins and their annotated locations for NP_001179912.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000020
      UniProtKB/TrEMBL
      A0AAA9SQG9, F1N2I5
      Related
      ENSBTAP00000014308.4, ENSBTAT00000014308.5
      Conserved Domains (1) summary
      COG0412
      Location:30 → 244
      DLH; Dienelactone hydrolase [Secondary metabolites biosynthesis, transport and catabolism]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037347.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      62947984..62973176
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005221648.5 → XP_005221705.1  carboxymethylenebutenolidase homolog isoform X1

      See identical proteins and their annotated locations for XP_005221705.1

      UniProtKB/TrEMBL
      A0AAA9SQG9, F1N2I5
      Conserved Domains (1) summary
      COG0412
      Location:30 → 244
      DLH; Dienelactone hydrolase [Secondary metabolites biosynthesis, transport and catabolism]
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials