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    ZSCAN26 zinc finger and SCAN domain containing 26 [ Bos taurus (domestic cattle) ]

    Gene ID: 512445, updated on 27-Dec-2024

    Summary

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    Official Symbol
    ZSCAN26provided by VGNC
    Official Full Name
    zinc finger and SCAN domain containing 26provided by VGNC
    Primary source
    VGNC:VGNC:37378
    See related
    BGD:BT18709; Ensembl:ENSBTAG00000031869
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    ZNF187
    Orthologs
    human mouse all
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    Genomic context

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    See ZSCAN26 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (30416134..30427385, complement)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA31 Neighboring gene piggyBac transposable element derived 1 Neighboring gene NFKB activating protein like Neighboring gene zinc finger with KRAB and SCAN domains 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC151668

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger and SCAN domain-containing protein 26
    Names
    zinc finger protein 187

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101957.1 → NP_001095427.1  zinc finger and SCAN domain-containing protein 26

      See identical proteins and their annotated locations for NP_001095427.1

      Status: PROVISIONAL

      Source sequence(s)
      BC149068
      UniProtKB/Swiss-Prot
      A6QNZ0
      Conserved Domains (6) summary
      smart00431
      Location:52 → 157
      SCAN; leucine rich region
      COG5048
      Location:290 → 469
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:285 → 305
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:283 → 305
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:47 → 135
      SCAN; SCAN domain
      pfam13465
      Location:297 → 322
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      30416134..30427385 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005223721.5 → XP_005223778.1  zinc finger and SCAN domain-containing protein 26 isoform X1

      See identical proteins and their annotated locations for XP_005223778.1

      Related
      ENSBTAP00000060673.2, ENSBTAT00000082167.2
      Conserved Domains (3) summary
      COG5048
      Location:290 → 469
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:285 → 305
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl02605
      Location:52 → 157
      SCAN; SCAN oligomerization domain

    2. XM_005223719.5 → XP_005223776.1  zinc finger and SCAN domain-containing protein 26 isoform X1

      See identical proteins and their annotated locations for XP_005223776.1

      Conserved Domains (3) summary
      COG5048
      Location:290 → 469
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:285 → 305
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl02605
      Location:52 → 157
      SCAN; SCAN oligomerization domain

    3. XM_024983544.2 → XP_024839312.1  zinc finger and SCAN domain-containing protein 26 isoform X1

      Conserved Domains (3) summary
      COG5048
      Location:290 → 469
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:285 → 305
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl02605
      Location:52 → 157
      SCAN; SCAN oligomerization domain

    4. XM_015459938.2 → XP_015315424.1  zinc finger and SCAN domain-containing protein 26 isoform X1

      Conserved Domains (3) summary
      COG5048
      Location:290 → 469
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:285 → 305
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl02605
      Location:52 → 157
      SCAN; SCAN oligomerization domain

    5. XM_059880295.1 → XP_059736278.1  zinc finger and SCAN domain-containing protein 26 isoform X1

    6. XM_005223720.4 → XP_005223777.1  zinc finger and SCAN domain-containing protein 26 isoform X1

      See identical proteins and their annotated locations for XP_005223777.1

      Conserved Domains (3) summary
      COG5048
      Location:290 → 469
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:285 → 305
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl02605
      Location:52 → 157
      SCAN; SCAN oligomerization domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6QNZ0.1 GenPept UniProtKB/Swiss-Prot:A6QNZ0

    Gene LinkOut

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