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    Myb/SANT-like DNA-binding domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827910, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Myb/SANT-like DNA-binding domain protein
    Primary source
    TAIR:AT4G02550
    Locus tag
    AT4G02550
    See related
    Araport:AT4G02550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T10P11.16; T10P11_16
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (1120365..1122223, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Independently evolved virulence effectors converge onto hubs in a plant immune system network. Mukhtar MS, et al. Science, 2011 Jul 29. PMID 21798943, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036497.2
    NM_001203730.2
    NM_001340388.1
    NM_116489.4
    NM_178958.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of defense response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Myb/SANT-like DNA-binding domain protein
    NP_001031574.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001190659.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2).
    NP_192164.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 370 Blast hits to 300 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 354; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
    NP_849289.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 350 Blast hits to 284 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 13; Plants - 331; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      1120365..1122223 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_178958.2 → NP_849289.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849289.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWE4, A0A654FLA2, Q8GYR6
      Conserved Domains (1) summary
      pfam12776
      Location:22 → 116
      Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain

    2. NM_116489.4 → NP_192164.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192164.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWI4, O22772
      Conserved Domains (1) summary
      pfam12776
      Location:22 → 116
      Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain

    3. NM_001340388.1 → NP_001328501.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWI4, O22772
      Conserved Domains (1) summary
      pfam12776
      Location:22 → 116
      Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain

    4. NM_001036497.2 → NP_001031574.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031574.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWI4, F4JHK5
      Conserved Domains (1) summary
      pfam12776
      Location:37 → 131
      Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain

    5. NM_001203730.2 → NP_001190659.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190659.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWE4, A0A654FLA2, Q8GYR6
      Conserved Domains (1) summary
      pfam12776
      Location:22 → 116
      Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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