NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|334186317|ref|NP_001190659|]
View 

Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

Protein Classification

MYB domain-containing protein( domain architecture ID 10579659)

MYB domain-containing protein such as Arabidopsis LIMYB (L10-interacting MYB domain-containing protein) which downregulates translational machinery genes.

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Myb_DNA-bind_3 pfam12776
Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT ...
 21-116 1.27e-28

Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins.


:

Pssm-ID: 432776  Cd Length: 96  Bit Score: 105.09  E-value: 1.27e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186317   21 IWSVGMDKCLIEALAVQAKNGNK-VDKCFNDKAYTAACVAVNTRFNLNLTSQKAINRLKTIKKRYRVMRDILSRDGFWWN 99
Cdd:pfam12776   1 YWTPEMDRYFVDLLLEQVNRGNRiEGHTFNKEAWKEILAAFNAKTGAQYTKDQLKNRWDNLRKQYRLWKRLLERPGFSWD 80

                          90
                  ....*....|....*..
gi 334186317  100 SSTKMIDCeSDELWRRY 116
Cdd:pfam12776  81 PTTRMVTA-TDEVWDNY 96
 
Name Accession Description Interval E-value
Myb_DNA-bind_3 pfam12776
Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT ...
 21-116 1.27e-28

Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins.


Pssm-ID: 432776  Cd Length: 96  Bit Score: 105.09  E-value: 1.27e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186317   21 IWSVGMDKCLIEALAVQAKNGNK-VDKCFNDKAYTAACVAVNTRFNLNLTSQKAINRLKTIKKRYRVMRDILSRDGFWWN 99
Cdd:pfam12776   1 YWTPEMDRYFVDLLLEQVNRGNRiEGHTFNKEAWKEILAAFNAKTGAQYTKDQLKNRWDNLRKQYRLWKRLLERPGFSWD 80

                          90
                  ....*....|....*..
gi 334186317  100 SSTKMIDCeSDELWRRY 116
Cdd:pfam12776  81 PTTRMVTA-TDEVWDNY 96
 
Name Accession Description Interval E-value
Myb_DNA-bind_3 pfam12776
Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT ...
 21-116 1.27e-28

Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins.


Pssm-ID: 432776  Cd Length: 96  Bit Score: 105.09  E-value: 1.27e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186317   21 IWSVGMDKCLIEALAVQAKNGNK-VDKCFNDKAYTAACVAVNTRFNLNLTSQKAINRLKTIKKRYRVMRDILSRDGFWWN 99
Cdd:pfam12776   1 YWTPEMDRYFVDLLLEQVNRGNRiEGHTFNKEAWKEILAAFNAKTGAQYTKDQLKNRWDNLRKQYRLWKRLLERPGFSWD 80

                          90
                  ....*....|....*..
gi 334186317  100 SSTKMIDCeSDELWRRY 116
Cdd:pfam12776  81 PTTRMVTA-TDEVWDNY 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH