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    peptidoglycan-binding LysM domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824445, updated on 18-Sep-2024

    Summary

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    Official Full Name
    peptidoglycan-binding LysM domain-containing protein
    Primary source
    TAIR:AT3G52790
    Locus tag
    AT3G52790
    See related
    Araport:AT3G52790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (19565790..19566492, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Purple acid phosphatases superfamily protein Neighboring gene A20/AN1-like zinc finger family protein Neighboring gene purple acid phosphatase 21

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_115139.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    peptidoglycan-binding LysM domain-containing protein
    NP_190847.1
    • peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392); BEST Arabidopsis thaliana protein match is: peptidoglycan-binding LysM domain-containing protein (TAIR:AT4G25433.1); Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19565790..19566492 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115139.3 → NP_190847.1  peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190847.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCT2, A0A384KU28, Q9LXI6
      Conserved Domains (1) summary
      PRK11198
      Location:61 → 107
      PRK11198; LysM domain/BON superfamily protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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