peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| PRK11198 super family | cl36007 | LysM domain/BON superfamily protein; Provisional |
61-107 | 2.29e-05 | ||
LysM domain/BON superfamily protein; Provisional The actual alignment was detected with superfamily member PRK11198: Pssm-ID: 236880 [Multi-domain] Cd Length: 147 Bit Score: 40.67 E-value: 2.29e-05
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| Name | Accession | Description | Interval | E-value | ||
| PRK11198 | PRK11198 | LysM domain/BON superfamily protein; Provisional |
61-107 | 2.29e-05 | ||
LysM domain/BON superfamily protein; Provisional Pssm-ID: 236880 [Multi-domain] Cd Length: 147 Bit Score: 40.67 E-value: 2.29e-05
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| LysM | cd00118 | Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ... |
63-105 | 2.84e-04 | ||
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. Pssm-ID: 212030 [Multi-domain] Cd Length: 45 Bit Score: 35.54 E-value: 2.84e-04
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| LysM | pfam01476 | LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ... |
64-106 | 1.28e-03 | ||
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known. Pssm-ID: 396179 [Multi-domain] Cd Length: 43 Bit Score: 33.91 E-value: 1.28e-03
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| Name | Accession | Description | Interval | E-value | ||
| PRK11198 | PRK11198 | LysM domain/BON superfamily protein; Provisional |
61-107 | 2.29e-05 | ||
LysM domain/BON superfamily protein; Provisional Pssm-ID: 236880 [Multi-domain] Cd Length: 147 Bit Score: 40.67 E-value: 2.29e-05
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| LysM | cd00118 | Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ... |
63-105 | 2.84e-04 | ||
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. Pssm-ID: 212030 [Multi-domain] Cd Length: 45 Bit Score: 35.54 E-value: 2.84e-04
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| LysM | pfam01476 | LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ... |
64-106 | 1.28e-03 | ||
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known. Pssm-ID: 396179 [Multi-domain] Cd Length: 43 Bit Score: 33.91 E-value: 1.28e-03
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| Blast search parameters | ||||
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