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    LHCA3 PSI type III chlorophyll a/b-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842446, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LHCA3
    Official Full Name
    PSI type III chlorophyll a/b-binding protein
    Primary source
    TAIR:AT1G61520
    Locus tag
    AT1G61520
    See related
    Araport:AT1G61520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LHCA3*1; LHCI-680; photosystem I light harvesting complex gene 3; T25B24.12; T25B24_12
    Summary
    PSI type III chlorophyll a/b-binding protein (Lhca3*1)
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    Genomic context

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    See LHCA3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (22699715..22701412)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene S-locus lectin protein kinase family protein Neighboring gene pseudo Neighboring gene miscRNA Neighboring gene Galactose oxidase/kelch repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Probing the structure of Lhca3 by mutation analysis. Mozzo M, et al. Biochim Biophys Acta, 2006 Dec. PMID 16950167
    2. Lhca5 interaction with plant photosystem I. Lucinski R, et al. FEBS Lett, 2006 Nov 27. PMID 17107674
    3. The role of Lhca complexes in the supramolecular organization of higher plant photosystem I. Wientjes E, et al. J Biol Chem, 2009 Mar 20. PMID 19139095, Free PMC Article
    4. The PSI-K subunit of photosystem I is involved in the interaction between light-harvesting complex I and the photosystem I reaction center core. Jensen PE, et al. J Biol Chem, 2000 Aug 11. PMID 10818090
    5. Lhca5--an LHC-type protein associated with photosystem I. Ganeteg U, et al. Plant Mol Biol, 2004 Mar. PMID 15356385

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036140.1
    NM_001198351.1
    NM_104833.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chlorophyll binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in photosynthesis, light harvesting in photosystem I IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to high light intensity IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to low light intensity stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 
    located_in plastoglobule HDA PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    PSI type III chlorophyll a/b-binding protein
    NP_001031217.1
    • photosystem I light harvesting complex gene 3 (LHCA3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, chloroplast, plastoglobule, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 5 (TAIR:AT1G45474.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001185280.1
    • photosystem I light harvesting complex gene 3 (LHCA3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, plastoglobule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 5 (TAIR:AT1G45474.2).
    NP_176347.1
    • photosystem I light harvesting complex gene 3 (LHCA3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 5 (TAIR:AT1G45474.2); Has 2380 Blast hits to 2284 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 2029; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22699715..22701412
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198351.1 → NP_001185280.1  PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185280.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WR83, Q2V2R9, Q43381, Q8LCR7, Q9SY97
      UniProtKB/TrEMBL
      A0A178W5Y6, A0A5S9WR73
      Conserved Domains (1) summary
      PLN00048
      Location:18 → 273
      PLN00048; photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

    2. NM_104833.3 → NP_176347.1  PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176347.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WR83, Q2V2R9, Q43381, Q8LCR7, Q9SY97
      UniProtKB/TrEMBL
      A0A178W5Y6, A0A5S9WR73
      Conserved Domains (1) summary
      PLN00048
      Location:18 → 273
      PLN00048; photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

    3. NM_001036140.1 → NP_001031217.1  PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031217.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SY97
      Conserved Domains (2) summary
      PLN00048
      Location:5 → 218
      PLN00048; photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
      cl02879
      Location:14 → 215
      Chloroa_b-bind; Chlorophyll A-B binding protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SY97.1

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