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Conserved domains on  [gi|79320443|ref|NP_001031217|]
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PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]

Protein Classification

PLN00048 family protein( domain architecture ID 11476354)

PLN00048 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 5-218 1.66e-153

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


:

Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 426.19  E-value: 1.66e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443    5 IWRCSDSS-----CSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPW 79
Cdd:PLN00048  44 LWFASKQSlsyldGTLPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPW 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   80 FQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKD 159
Cdd:PLN00048 124 FQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKD 203

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 79320443  160 EKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 218
Cdd:PLN00048 204 EKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNLKFH 262
 
Name Accession Description Interval E-value
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 5-218 1.66e-153

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 426.19  E-value: 1.66e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443    5 IWRCSDSS-----CSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPW 79
Cdd:PLN00048  44 LWFASKQSlsyldGTLPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPW 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   80 FQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKD 159
Cdd:PLN00048 124 FQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKD 203

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 79320443  160 EKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 218
Cdd:PLN00048 204 EKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNLKFH 262
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
14-189 8.98e-50

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 159.39  E-value: 8.98e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443    14 SLPGDYGFDPLGLSDPEGTggfiePRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAEtalPWFQTGVIPPagtytY 93
Cdd:pfam00504   8 SLPGDYGFDPLGLSADPET-----FKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEP---VWFEAGAVAL-----H 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443    94 WADNYTLFVL-EMALMGFAEHRRLQDWYNPGsmgkqyflglekgLAGSGNPAYPGGPFFNPLGF-GKDEKSLKELKLKEV 171
Cdd:pfam00504  75 AQSVPTLLALqILLLMGFLELARWQGGKAPG-------------LGGGGDRGYPGGFGFDPLGLaKKDPETLAELKLKEL 141

                         170
                  ....*....|....*...
gi 79320443   172 KNGRLAMLAILGYFIQGL 189
Cdd:pfam00504 142 KNGRLAMIAFLGFFVQEL 159
LHCA5 COG5743
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 37-71 3.58e-04

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 37.61  E-value: 3.58e-04
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 79320443  37 EPR--WLAYGEIINGRFAMLGAAGAIAPEILGKAGLI 71
Cdd:COG5743  20 EPRfgFTPYAERLNGRLAMIGFVALLLIELLTGQGFL 56
 
Name Accession Description Interval E-value
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 5-218 1.66e-153

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 426.19  E-value: 1.66e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443    5 IWRCSDSS-----CSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPW 79
Cdd:PLN00048  44 LWFASKQSlsyldGTLPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPW 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   80 FQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKD 159
Cdd:PLN00048 124 FQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKD 203

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 79320443  160 EKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 218
Cdd:PLN00048 204 EKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNLKFH 262
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 14-215 4.23e-65

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 201.64  E-value: 4.23e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   14 SLPGDYGFDPLGL-SDPEGTggfiepRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLipaeTALP-WFQTGvippaGTY 91
Cdd:PLN00147  61 TLAGDFGFDPLGLgEDPESL------KWYVQAELVHSRFAMAGVAGILFTDLLRVTGI----RNLPvWYEAG-----AVK 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   92 TYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSgNPAYPGGPFFNPLGFGKDEKSLKELKLKE 170
Cdd:PLN00147 126 FEFASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEgSFFGLEAALEGL-EPGYPGGPLFNPLGLAKDIENAHDWKLKE 204

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 79320443  171 VKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 215
Cdd:PLN00147 205 IKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTL 249
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 14-212 4.37e-55

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 175.97  E-value: 4.37e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   14 SLPGDYGFDPLGLS-DPEGTggfiepRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLipaeTALP-WFQtgvippAGTY 91
Cdd:PLN00097  60 SLPCDYGFDPLNLGaDPEML------KWFVQAELMHARWAMLGLAGCVAPELLTKIGM----ADLPnWID------AAKW 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   92 -TYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSgNPAYPGGpFFNPLGFGKDEKSLKELKLKE 170
Cdd:PLN00097 124 dGYWAGAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNT-DVGYPKG-LFDKFGWAKDEKKAAELKLKE 201

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 79320443  171 VKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVL 212
Cdd:PLN00097 202 IANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
14-189 8.98e-50

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 159.39  E-value: 8.98e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443    14 SLPGDYGFDPLGLSDPEGTggfiePRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAEtalPWFQTGVIPPagtytY 93
Cdd:pfam00504   8 SLPGDYGFDPLGLSADPET-----FKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEP---VWFEAGAVAL-----H 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443    94 WADNYTLFVL-EMALMGFAEHRRLQDWYNPGsmgkqyflglekgLAGSGNPAYPGGPFFNPLGF-GKDEKSLKELKLKEV 171
Cdd:pfam00504  75 AQSVPTLLALqILLLMGFLELARWQGGKAPG-------------LGGGGDRGYPGGFGFDPLGLaKKDPETLAELKLKEL 141

                         170
                  ....*....|....*...
gi 79320443   172 KNGRLAMLAILGYFIQGL 189
Cdd:pfam00504 142 KNGRLAMIAFLGFFVQEL 159
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 14-216 3.38e-49

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 160.85  E-value: 3.38e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   14 SLPGDYGFDPLGLS-DPEGTggfiepRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETalpWFQtgvippAGTYT 92
Cdd:PLN00101  69 SLPGDNGFDPLGLAeDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQ---WYD------AGKAE 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   93 YWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMG-----KQYflGLEKGLAGsgnpaYPGGpFFNPLGFGKDEkslkELK 167
Cdd:PLN00101 134 YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNqdpifKQY--SLPPNEVG-----YPGG-IFNPLNFAPTE----EAK 201

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 79320443  168 LKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 216
Cdd:PLN00101 202 EKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 14-218 8.79e-48

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 157.77  E-value: 8.79e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   14 SLPGDYGFDPLGL-SDPEGTggfiepRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIpaeTALPWFQtgvippAGTYT 92
Cdd:PLN00098  78 SLPGDFGFDPLGLgSDPELL------KWFAQAELMHSRWAMLAVAGILIPECLERLGFI---ENFSWYD------AGARE 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   93 YWADNYTLFVLEMALMGFAEHRRLQDWYNPGSmgkqyfLGLEKGLAGSGNP----AYPGGPFFNPLGFGK-DEKSLKELK 167
Cdd:PLN00098 143 YFADPTTLFVVQMVLMGWAEGRRWADLIKPGC------VDIEPKLPNKTNPkpdvGYPGGLWFDPMMWGRgSPEPVMVLR 216

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 79320443  168 LKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 218
Cdd:PLN00098 217 TKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTSH 267
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 16-210 1.40e-43

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 146.82  E-value: 1.40e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   16 PGDYGFDPLGLS-DPEGtggFIEPRWLaygEIINGRFAMLGAAGAIAPEILGKAGLIPAETAlpWFQTGV-IPPAGTYTY 93
Cdd:PLN00025  71 PGDYGWDTAGLSaDPET---FARNREL---EVIHARWAMLGALGCVTPELLAKNGVKFGEAV--WFKAGAqIFSEGGLDY 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   94 WAdNYTL---------FVLEMALMGFAEHRRLqdwyNPGSMGKqyflglekglagSGNPAYPGGPFfNPLGFGKDEKSLK 164
Cdd:PLN00025 143 LG-NPSLvhaqsilaiWACQVVLMGAVEGYRV----NGGPLGE------------GLDPLYPGGSF-DPLGLADDPDTFA 204

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 79320443  165 ELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 210
Cdd:PLN00025 205 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANN 250
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 14-217 8.06e-37

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 131.08  E-value: 8.06e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   14 SLPGDYGFDPLGLS-DPEGTGGFIEprwlayGEIINGRFAMLGAAGAIAPEILGKAGLIP-AETAlpWFQTGVIPPAG-T 90
Cdd:PLN00171 126 ELPGDYGFDIAGLGkDPVAFDKYFN------FEILHARWAMLAALGVVIPEVLDLFGAVHfAEPV--WWRVGYAKLQGdT 197

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   91 YTY-------WADNYTLFVL---EMALMGFAEHRRlqdwynpgsmgkqyFLGLEK----GLAGSGNPAYPGGPFFNPLGF 156
Cdd:PLN00171 198 LDYlgipglhIAGSQGVIVIaicQALLMVGPEYAR--------------YCGIEAleplGIYLPGDINYPGGALFDPLGL 263

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 79320443  157 GKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKF 217
Cdd:PLN00171 264 SKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSLKL 324
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 14-211 1.83e-36

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 127.84  E-value: 1.83e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   14 SLPGDYGFDPLGLSD-PEGTGGFIEprwlayGEIINGRFAMLGAAGAIAPEILGKAGLIPAETalpWFQTgvipPAGTYT 92
Cdd:PLN00099  60 SAPGDFGFDPLRLGEvPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWVKAQE---WAAI----PGGQAT 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   93 Y------WADNYTLFVLEMALMGFAEHRRlqdwynpgSMGKQyflgLEKglagsgnPAYPGGPFfNPLGFGKDEKSLKEL 166
Cdd:PLN00099 127 YlgnpvpWGTLPTILAIEFLAIAFVEHQR--------SMEKD----PEK-------KKYPGGAF-DPLGYSKDPKKFEEY 186

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 79320443  167 KLKEVKNGRLAMLAILGYFI-QGLVTGVGPYQNLLDHLADPVNNNV 211
Cdd:PLN00099 187 KVKEIKNGRLALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNNI 232
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 14-214 1.68e-30

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 112.66  E-value: 1.68e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   14 SLPGDYGFDPLGL-SDPEGTggfiepRWLAYGEIINGRFAMLGAAGAIAPEILGkaglipaetaLPWFQTgvippAGTYT 92
Cdd:PLN00100  51 TMAGDYGFDPLRLgANPETL------PYLQEAELMNGRWAMAATAGILFTDAVG----------LPKFWE-----AGAEK 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   93 YWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGkqyFLGlekglagsgnpAYPggpfFNPLGfgkdEKSlKELKLKEVK 172
Cdd:PLN00100 110 YGLDLQTLVLIQVVVMAVLEAARYRGFMKTGESG---VLS-----------FFP----FDPTG----MDS-PEMKVKEVK 166

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 79320443  173 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTS 214
Cdd:PLN00100 167 NGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTS 208
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 14-215 3.59e-25

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 99.48  E-value: 3.59e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   14 SLPGDYGFDPLGLSDP---------------------EGTGGFIE----------PRWLAYG-------EIINGRFAMLG 55
Cdd:PLN00187  68 SLVGDYGFDPFGLGKPaeylqfdldsldqnlaknlagDVIGTRTEaseikstpfqPYSEVFGlqrfrecELIHGRWAMLA 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   56 AAGAIAPEILgkaglipaeTALPWFQTGVIPPAGTYTYWADNY-----TLFVLEMALMGFAEHRRLQDwynpgsmgkqyf 130
Cdd:PLN00187 148 TLGALSVEAL---------TGVTWQDAGKVELVDGSSYLGQPLpfsitTLIWIEVLVIGYIEFQRNAE------------ 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443  131 LGLEKGLagsgnpaYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 210
Cdd:PLN00187 207 LDPEKRL-------YPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTT 279


                 ....*
gi 79320443  211 VLTSL 215
Cdd:PLN00187 280 IIDTF 284
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 14-187 1.56e-23

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 94.61  E-value: 1.56e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   14 SLPGDYGFDPLGL-SDPegtgGFIepRWLAYGEIINGRFAMLGAAGAIAPEilgkaglipAETALPWFQTGVIPPA-GTY 91
Cdd:PLN00170  73 SLPGDYGFDPLGLgKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQ---------AWSGIPWFEAGADPGAiAPF 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   92 TYWadnyTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLA----GSGNPAYPGGPFFNPLGFG---------K 158
Cdd:PLN00170 138 SFG----SLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAEnfanATGLQGYPGGKFFDPLGLAgtvkdgvyiP 213

                        170       180
                 ....*....|....*....|....*....
gi 79320443  159 DEKSLKELKLKEVKNGRLAMLAILGYFIQ 187
Cdd:PLN00170 214 DFEKLERLKLAEIKHARLAMVAMLIFYFE 242
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 17-196 1.09e-10

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 58.93  E-value: 1.09e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   17 GDYGFDPLGLSDPegtggfIEP--RWLAYGEIINGRFAMLGAAGAIAPE---ILGKA-------GLIPAETALPwfQTGv 84
Cdd:PLN00089  55 GSKKFDPLGLAEK------VEEflPWFRESELKHGRAAMLAVAGFIAPDfvrIPGEAysfaaipKTIDAHDALL--KSG- 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79320443   85 ipPAGTYTYWADNYTLFVLEMALMGFAEHRRLqdwynPGSMGkqyflglekglagsgnpaypggpfFNPLG-FGKDEKSL 163
Cdd:PLN00089 126 --AMIQIFAWIGFVDLAVSAPAAAAAAEFDRT-----PGDFG------------------------FDLLAlYPKDAAKM 174

                        170       180       190
                 ....*....|....*....|....*....|....
gi 79320443  164 KELKLKEVKNGRLAMLAILGYFIQGLVTGVG-PY 196
Cdd:PLN00089 175 EKKKDKELKNGRLAMVAIGGIATGSAITGHGfPY 208
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
148-194 4.41e-08

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 50.77  E-value: 4.41e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 79320443   148 GPF-FNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVG 194
Cdd:pfam00504  11 GDYgFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLG 58
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 150-187 2.83e-06

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 46.27  E-value: 2.83e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 79320443  150 FFNPLGF--GKDEKSLKELKLKEVKNGRLAMLAILGYFIQ 187
Cdd:PLN00120  46 FFDPLGLvdDGDQEKFDRLRYVEIKHGRISMLAVVGYLVT 85
LHCA5 COG5743
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 37-71 3.58e-04

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 37.61  E-value: 3.58e-04
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 79320443  37 EPR--WLAYGEIINGRFAMLGAAGAIAPEILGKAGLI 71
Cdd:COG5743  20 EPRfgFTPYAERLNGRLAMIGFVALLLIELLTGQGFL 56
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 137-194 3.77e-04

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 40.28  E-value: 3.77e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 79320443  137 LAGSGNPAY-----PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVG 194
Cdd:PLN00101  57 LPGLASPGYlngslPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 119
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 146-193 1.01e-03

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 39.14  E-value: 1.01e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 79320443  146 PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGV 193
Cdd:PLN00170  75 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 122
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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