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    pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830933, updated on 18-Sep-2024

    Summary

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    Official Full Name
    pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein
    Primary source
    TAIR:AT5G10690
    Locus tag
    AT5G10690
    See related
    Araport:AT5G10690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAJ23.50; MAJ23_50
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    13
    Sequence:
    Chromosome: 5; NC_003076.8 (3373640..3377579, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene calmodulin-binding protein-like protein Neighboring gene pseudo Neighboring gene calmodulin-binding protein-like protein Neighboring gene methionyl-tRNA synthetase Neighboring gene ncRNA Neighboring gene Peptidyl-tRNA hydrolase II (PTH2) family protein Neighboring gene centromere protein O

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_121106.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein
    NP_568233.1
    • pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G12775.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3373640..3377579 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343131.1 → NP_001332464.1  pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LCN2, Q8VYD6, Q9FT63
      UniProtKB/TrEMBL
      A0A5S9Y3D6, A0A654G003
      Conserved Domains (5) summary
      PLN03218
      Location:64 → 274
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:192 → 219
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:223 → 277
      PPR_2; PPR repeat family
      cl15354
      Location:473 → 546
      CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
      cl29710
      Location:263 → 294
      PPR; PPR repeat

    2. NM_121106.4 → NP_568233.1  pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568233.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LCN2, Q8VYD6, Q9FT63
      UniProtKB/TrEMBL
      A0A5S9Y3D6, A0A654G003
      Conserved Domains (5) summary
      PLN03218
      Location:64 → 274
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:192 → 219
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:223 → 277
      PPR_2; PPR repeat family
      cl15354
      Location:473 → 546
      CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
      cl29710
      Location:263 → 294
      PPR; PPR repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VYD6.1

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