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Conserved domains on  [gi|18416350|ref|NP_568233|]
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pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 223-277 1.26e-14

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 68.16  E-value: 1.26e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 18416350   223 PDRLTYNTLIHACIKCGDLDAAMKFFNDMKEKAeeyyddfLQPDVVTYTTLVKGF 277
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRG-------VKPNVYTYTILINGL 48
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 64-274 7.82e-13

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 71.45  E-value: 7.82e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350    64 EVEAAKKRYGRLN-----------TIVMNSvleaCVHCGNIDLALRMFHEMAEPGgIGVDSISYATILKGLGKARRIDEA 132
Cdd:PLN03218  594 QVDRAKEVYQMIHeynikgtpevyTIAVNS----CSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKA 668

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350   133 FQML-ETIEYGTAAGTPKLSSsliygLLDALINAGDLRRAnglLARYDILLLDHGTPSVLIYNLLMKGYVNSESPQAAIN 211
Cdd:PLN03218  669 FEILqDARKQGIKLGTVSYSS-----LMGACSNAKNWKKA---LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18416350   212 LLDEMLRLRLEPDRLTYNTLIHACIKCGDLDAAMKFFNDMKEkaeeyydDFLQPDVVTYTTLV 274
Cdd:PLN03218  741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-------DGIKPNLVMCRCIT 796
COG3448 super family cl34614
CBS-domain-containing membrane protein [Signal transduction mechanisms];
486-546 1.64e-03

CBS-domain-containing membrane protein [Signal transduction mechanisms];


The actual alignment was detected with superfamily member COG3448:

Pssm-ID: 442671 [Multi-domain]  Cd Length: 136  Bit Score: 39.08  E-value: 1.64e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18416350 486 VPIVDDRGSCIGLLHREDC--------------NNLDAPLVSMMRSPPTCVSTTTSIGRVVDLVLEKKLKMVIVV 546
Cdd:COG3448  36 LPVVDEDGRLVGIVTERDLlrallpdrldeleeRLLDLPVEDVMTRPVVTVTPDTPLEEAAELMLEHGIHRLPVV 110
COG2524 super family cl34478
Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription];
422-573 4.42e-03

Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription];


The actual alignment was detected with superfamily member COG2524:

Pssm-ID: 442013 [Multi-domain]  Cd Length: 206  Bit Score: 38.71  E-value: 4.42e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350 422 GGMAAVRLETLLGFSKSILRPHLLSKVIPSEPIESIMirfeaTRPLLgTLQ----LKNVAMRFFKEQV--VPIVDDrGSC 495
Cdd:COG2524  56 LGLLLLLLLIVLQAAAVRVVAEKELGLVLKMKVKDIM-----TKDVI-TVSpdttLEEALELMLEKGIsgLPVVDD-GKL 128

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350 496 IGLLHREDC--------NNLDAPLVSMMRSPPTCVSTTTSIGRVVDLVLEKKLKMVIVVHCGNfsgsgyssKAVGAFTRA 567
Cdd:COG2524 129 VGIITERDLlkalaegrDLLDAPVSDIMTRDVVTVSEDDSLEEALRLMLEHGIGRLPVVDDDG--------KLVGIITRT 200


                ....*.
gi 18416350 568 QLYRLF 573
Cdd:COG2524 201 DILRAL 206
PPR super family cl29710
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 263-294 7.97e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


The actual alignment was detected with superfamily member pfam12854:

Pssm-ID: 421891 [Multi-domain]  Cd Length: 34  Bit Score: 34.24  E-value: 7.97e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 18416350   263 LQPDVVTYTTLVKGFGDATDLLSLQEIFLEMK 294
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
 
Name Accession Description Interval E-value
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 223-277 1.26e-14

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 68.16  E-value: 1.26e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 18416350   223 PDRLTYNTLIHACIKCGDLDAAMKFFNDMKEKAeeyyddfLQPDVVTYTTLVKGF 277
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRG-------VKPNVYTYTILINGL 48
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 64-274 7.82e-13

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 71.45  E-value: 7.82e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350    64 EVEAAKKRYGRLN-----------TIVMNSvleaCVHCGNIDLALRMFHEMAEPGgIGVDSISYATILKGLGKARRIDEA 132
Cdd:PLN03218  594 QVDRAKEVYQMIHeynikgtpevyTIAVNS----CSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKA 668

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350   133 FQML-ETIEYGTAAGTPKLSSsliygLLDALINAGDLRRAnglLARYDILLLDHGTPSVLIYNLLMKGYVNSESPQAAIN 211
Cdd:PLN03218  669 FEILqDARKQGIKLGTVSYSS-----LMGACSNAKNWKKA---LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18416350   212 LLDEMLRLRLEPDRLTYNTLIHACIKCGDLDAAMKFFNDMKEkaeeyydDFLQPDVVTYTTLV 274
Cdd:PLN03218  741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-------DGIKPNLVMCRCIT 796
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 188-237 5.93e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 57.76  E-value: 5.93e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 18416350   188 PSVLIYNLLMKGYVNSESPQAAINLLDEMLRLRLEPDRLTYNTLIHACIK 237
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 227-254 4.98e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.21  E-value: 4.98e-06
                          10        20
                  ....*....|....*....|....*...
gi 18416350   227 TYNTLIHACIKCGDLDAAMKFFNDMKEK 254
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKER 29
COG3448 COG3448
CBS-domain-containing membrane protein [Signal transduction mechanisms];
486-546 1.64e-03

CBS-domain-containing membrane protein [Signal transduction mechanisms];


Pssm-ID: 442671 [Multi-domain]  Cd Length: 136  Bit Score: 39.08  E-value: 1.64e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18416350 486 VPIVDDRGSCIGLLHREDC--------------NNLDAPLVSMMRSPPTCVSTTTSIGRVVDLVLEKKLKMVIVV 546
Cdd:COG3448  36 LPVVDEDGRLVGIVTERDLlrallpdrldeleeRLLDLPVEDVMTRPVVTVTPDTPLEEAAELMLEHGIHRLPVV 110
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 192-224 2.16e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.89  E-value: 2.16e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 18416350   192 IYNLLMKGYVNSESPQAAINLLDEMLRLRLEPD 224
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 153-260 3.15e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.25  E-value: 3.15e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350 153 SLIYGLLDALINAGDLRRANGLLARydilLLDHGTPSVLIYNLLMKGYVNSESPQAAINLLDEMLRLRLEpDRLTYNTLI 232
Cdd:COG4783   5 EALYALAQALLLAGDYDEAEALLEK----ALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD-EPEARLNLG 79

                        90       100
                ....*....|....*....|....*...
gi 18416350 233 HACIKCGDLDAAMKFFNDMKEKAEEYYD 260
Cdd:COG4783  80 LALLKAGDYDEALALLEKALKLDPEHPE 107
COG2524 COG2524
Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription];
422-573 4.42e-03

Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription];


Pssm-ID: 442013 [Multi-domain]  Cd Length: 206  Bit Score: 38.71  E-value: 4.42e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350 422 GGMAAVRLETLLGFSKSILRPHLLSKVIPSEPIESIMirfeaTRPLLgTLQ----LKNVAMRFFKEQV--VPIVDDrGSC 495
Cdd:COG2524  56 LGLLLLLLLIVLQAAAVRVVAEKELGLVLKMKVKDIM-----TKDVI-TVSpdttLEEALELMLEKGIsgLPVVDD-GKL 128

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350 496 IGLLHREDC--------NNLDAPLVSMMRSPPTCVSTTTSIGRVVDLVLEKKLKMVIVVHCGNfsgsgyssKAVGAFTRA 567
Cdd:COG2524 129 VGIITERDLlkalaegrDLLDAPVSDIMTRDVVTVSEDDSLEEALRLMLEHGIGRLPVVDDDG--------KLVGIITRT 200


                ....*.
gi 18416350 568 QLYRLF 573
Cdd:COG2524 201 DILRAL 206
CBS_pair_SF cd02205
Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily; The CBS ...
 473-546 5.36e-03

Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).


Pssm-ID: 341358 [Multi-domain]  Cd Length: 113  Bit Score: 36.84  E-value: 5.36e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350 473 LKNVAMRFFKEQV--VPIVDDRGSCIGLLHRED--------CNNLDAPLVSMMRSPPTCVSTTTSIGRVVDLVLEKKLKM 542
Cdd:cd02205  13 VREALELMAENGIgaLPVVDDDGKLVGIVTERDilralvegGLALDTPVAEVMTPDVITVSPDTDLEEALELMLEHGIRR 92


                ....
gi 18416350 543 VIVV 546
Cdd:cd02205  93 LPVV 96
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 263-294 7.97e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 34.24  E-value: 7.97e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 18416350   263 LQPDVVTYTTLVKGFGDATDLLSLQEIFLEMK 294
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
 
Name Accession Description Interval E-value
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 223-277 1.26e-14

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 68.16  E-value: 1.26e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 18416350   223 PDRLTYNTLIHACIKCGDLDAAMKFFNDMKEKAeeyyddfLQPDVVTYTTLVKGF 277
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRG-------VKPNVYTYTILINGL 48
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 64-274 7.82e-13

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 71.45  E-value: 7.82e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350    64 EVEAAKKRYGRLN-----------TIVMNSvleaCVHCGNIDLALRMFHEMAEPGgIGVDSISYATILKGLGKARRIDEA 132
Cdd:PLN03218  594 QVDRAKEVYQMIHeynikgtpevyTIAVNS----CSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKA 668

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350   133 FQML-ETIEYGTAAGTPKLSSsliygLLDALINAGDLRRAnglLARYDILLLDHGTPSVLIYNLLMKGYVNSESPQAAIN 211
Cdd:PLN03218  669 FEILqDARKQGIKLGTVSYSS-----LMGACSNAKNWKKA---LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18416350   212 LLDEMLRLRLEPDRLTYNTLIHACIKCGDLDAAMKFFNDMKEkaeeyydDFLQPDVVTYTTLV 274
Cdd:PLN03218  741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-------DGIKPNLVMCRCIT 796
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 188-237 5.93e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 57.76  E-value: 5.93e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 18416350   188 PSVLIYNLLMKGYVNSESPQAAINLLDEMLRLRLEPDRLTYNTLIHACIK 237
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 81-406 6.66e-11

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 65.28  E-value: 6.66e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350    81 NSVLEACVHCGNIDLALRMFhEMAEPGGIGVDSISYATILKGLGKARRIDEAFQMLEtiEYGTAAGTPKLSSsliYG-LL 159
Cdd:PLN03218  441 NMLMSVCASSQDIDGALRVL-RLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFH--EMVNAGVEANVHT---FGaLI 514

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350   160 DALINAGDLRRANGllaRYDILLLDHGTPSVLIYNLLMKGYVNSESPQAAINLLDEMlrlRLE-----PDRLTYNTLIHA 234
Cdd:PLN03218  515 DGCARAGQVAKAFG---AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM---KAEthpidPDHITVGALMKA 588

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350   235 CIKCGDLDAAMKFFNDMKEkaeeyYDDFLQPDVvtYTTLVKGFGDATDLLSLQEIFLEMKLcENVFIDRTAFTAVVDAML 314
Cdd:PLN03218  589 CANAGQVDRAKEVYQMIHE-----YNIKGTPEV--YTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAG 660

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350   315 KCGSTSGALCVFgEILKRSGanevLRPKPHLYLSMMRAFAVQGDYGMVRNLY-----LRLWPDSSgsiskavqqeADNLL 389
Cdd:PLN03218  661 HAGDLDKAFEIL-QDARKQG----IKLGTVSYSSLMGACSNAKNWKKALELYediksIKLRPTVS----------TMNAL 725

                         330
                  ....*....|....*..
gi 18416350   390 MEAALNDGQLDEALGIL 406
Cdd:PLN03218  726 ITALCEGNQLPKALEVL 742
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 82-298 3.08e-10

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 63.36  E-value: 3.08e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350    82 SVLEACVHCGNIDLALRMFHEMA----EP----------------------GGIGV--------DSISYATILKGLGKAR 127
Cdd:PLN03218  477 TLISTCAKSGKVDAMFEVFHEMVnagvEAnvhtfgalidgcaragqvakafGAYGImrsknvkpDRVVFNALISACGQSG 556

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350   128 RIDEAFQMLETIeygTAAGTPKLSSSLIYG-LLDALINAGDLRRAN---GLLARYDIllldHGTPSVliYNLLmkgyVNS 203
Cdd:PLN03218  557 AVDRAFDVLAEM---KAETHPIDPDHITVGaLMKACANAGQVDRAKevyQMIHEYNI----KGTPEV--YTIA----VNS 623

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350   204 ESPQA----AINLLDEMLRLRLEPDRLTYNTLIHACIKCGDLDAAMKFFNDMK------------------------EKA 255
Cdd:PLN03218  624 CSQKGdwdfALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARkqgiklgtvsysslmgacsnaknwKKA 703

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 18416350   256 EEYYDDF----LQPDVVTYTTLVKGFGDATDLLSLQEIFLEMK---LCEN 298
Cdd:PLN03218  704 LELYEDIksikLRPTVSTMNALITALCEGNQLPKALEVLSEMKrlgLCPN 753
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 212-279 1.25e-09

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 54.29  E-value: 1.25e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18416350   212 LLDEMLRLRLEPDRLTYNTLIHACIKCGDLDAAMKFFNDMKEKAeeyyddfLQPDVVTYTTLVKGFGD 279
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKG-------IKPTLDTYNAILGVIGG 62
PLN03077 PLN03077
Protein ECB2; Provisional
 78-293 2.83e-09

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 60.25  E-value: 2.83e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350   78 IVMNSVLEACVHCGNIDLALRMFHEMAEPggigvDSISYATILKGLGKARRIDEAF----QMLETIEYGTAAGTPKLSSS 153
Cdd:PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPEK-----DVISWTSIIAGLRLNNRCFEALiffrQMLLTLKPNSVTLIAALSAC 499

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350  154 LIYGLLDA--LINAGDLRRANGLLARYDILLLD----------------HGTPSVLIYNLLMKGYVNSESPQAAINLLDE 215
Cdd:PLN03077 500 ARIGALMCgkEIHAHVLRTGIGFDGFLPNALLDlyvrcgrmnyawnqfnSHEKDVVSWNILLTGYVAHGKGSMAVELFNR 579

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18416350  216 MLRLRLEPDRLTYNTLIHACIKCGDLDAAMKFFNDMKEKAEeyyddfLQPDVVTYTTLVKGFGDATDLLSLQEIFLEM 293
Cdd:PLN03077 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS------ITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 221-252 4.98e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 48.88  E-value: 4.98e-08
                          10        20        30
                  ....*....|....*....|....*....|..
gi 18416350   221 LEPDRLTYNTLIHACIKCGDLDAAMKFFNDMK 252
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 76-125 1.59e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 45.05  E-value: 1.59e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 18416350    76 NTIVMNSVLEACVHCGNIDLALRMFHEMAEpGGIGVDSISYATILKGLGK 125
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKK-RGVKPNVYTYTILINGLCK 50
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 227-254 3.64e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 43.61  E-value: 3.64e-06
                          10        20
                  ....*....|....*....|....*...
gi 18416350   227 TYNTLIHACIKCGDLDAAMKFFNDMKEK 254
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEK 29
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 227-254 4.98e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.21  E-value: 4.98e-06
                          10        20
                  ....*....|....*....|....*...
gi 18416350   227 TYNTLIHACIKCGDLDAAMKFFNDMKEK 254
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKER 29
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 187-322 7.71e-06

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 49.11  E-value: 7.71e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350   187 TPSVLIYNLLMKGYVNSESPQAAINLLDEMLRLRLEPDRLTYNTLIHACIKCGDLDAAMKFFNDMkEKAEeyyddfLQPD 266
Cdd:PLN03218  434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM-VNAG------VEAN 506

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 18416350   267 VVTYTTLVKGFGDATDLLSLQEIFLEMKlCENVFIDRTAFTAVVDAmlkCGStSGA 322
Cdd:PLN03218  507 VHTFGALIDGCARAGQVAKAFGAYGIMR-SKNVKPDRVVFNALISA---CGQ-SGA 557
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 62-278 4.23e-05

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 46.40  E-value: 4.23e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350   62 VEEVEAAKKRYGRLNTIVMNSVLEACVHCGNIDLALRMFHEMAEpGGIGVDSISYATILkglgkarRIdeaFQMLETIEY 141
Cdd:PLN03081 275 IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD-SGVSIDQFTFSIMI-------RI---FSRLALLEH 343

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350  142 GTAAgtpklSSSLI-YGL-LDALINAG--DLRRANGLL--ARYDILLLDHgtPSVLIYNLLMKGYVNSESPQAAINLLDE 215
Cdd:PLN03081 344 AKQA-----HAGLIrTGFpLDIVANTAlvDLYSKWGRMedARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFER 416

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18416350  216 MLRLRLEPDRLTYNTLIHACIKCGDLDAAMKFFNDMKEkaeeyyDDFLQPDVVTYTTLVKGFG 278
Cdd:PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE------NHRIKPRAMHYACMIELLG 473
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 113-326 9.92e-05

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 45.25  E-value: 9.92e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350  113 SISYATILKGLGKARRIDEAFQMLETIEYGtaaGTPKLSSSLIYGLLDALINagdLRRANGLLARYDILLLDHGTPSVLI 192
Cdd:PLN03081  87 GVSLCSQIEKLVACGRHREALELFEILEAG---CPFTLPASTYDALVEACIA---LKSIRCVKAVYWHVESSGFEPDQYM 160

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350  193 YNLLMKGYVNSESPQAAINLLDEMlrlrlePDR--LTYNTLIHACIKCGDLDAAMKFFNDMKEKaeeyYDDFLQPDVVTY 270
Cdd:PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEM------PERnlASWGTIIGGLVDAGNYREAFALFREMWED----GSDAEPRTFVVM 230

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 18416350  271 TTLVKGFGDATDLLSLQEIFLEMKLCENVFIDrtafTAVVDAMLKCGSTSGALCVF 326
Cdd:PLN03081 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVS----CALIDMYSKCGDIEDARCVF 282
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 188-237 1.12e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 37.72  E-value: 1.12e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 18416350   188 PSVLIYNLLMKGYVNSESPQAAINLLDEMLRLRLEPDRLTYNTLIHACIK 237
Cdd:pfam13812  13 LNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
COG3448 COG3448
CBS-domain-containing membrane protein [Signal transduction mechanisms];
486-546 1.64e-03

CBS-domain-containing membrane protein [Signal transduction mechanisms];


Pssm-ID: 442671 [Multi-domain]  Cd Length: 136  Bit Score: 39.08  E-value: 1.64e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18416350 486 VPIVDDRGSCIGLLHREDC--------------NNLDAPLVSMMRSPPTCVSTTTSIGRVVDLVLEKKLKMVIVV 546
Cdd:COG3448  36 LPVVDEDGRLVGIVTERDLlrallpdrldeleeRLLDLPVEDVMTRPVVTVTPDTPLEEAAELMLEHGIHRLPVV 110
COG2905 COG2905
Signal-transduction protein containing cAMP-binding, CBS, and nucleotidyltransferase domains ...
 473-577 2.00e-03

Signal-transduction protein containing cAMP-binding, CBS, and nucleotidyltransferase domains [Signal transduction mechanisms];


Pssm-ID: 442149 [Multi-domain]  Cd Length: 124  Bit Score: 38.27  E-value: 2.00e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350 473 LKNVAMRFFKEQV--VPIVDDRGSCIG------LLHR---EDCNNLDAPLVSMMRSPPTCVSTTTSIGRVVDLVLEKKLK 541
Cdd:COG2905  18 VREAARLMTEKGVgsLVVVDDDGRLVGiitdrdLRRRvlaEGLDPLDTPVSEVMTRPPITVSPDDSLAEALELMEEHRIR 97

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 18416350 542 MVIVVHCGnfsgsgyssKAVGAFTRAQLYRLFESEQ 577
Cdd:COG2905  98 HLPVVDDG---------KLVGIVSITDLLRALSEEL 124
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 192-224 2.16e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.89  E-value: 2.16e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 18416350   192 IYNLLMKGYVNSESPQAAINLLDEMLRLRLEPD 224
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 153-260 3.15e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.25  E-value: 3.15e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350 153 SLIYGLLDALINAGDLRRANGLLARydilLLDHGTPSVLIYNLLMKGYVNSESPQAAINLLDEMLRLRLEpDRLTYNTLI 232
Cdd:COG4783   5 EALYALAQALLLAGDYDEAEALLEK----ALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD-EPEARLNLG 79

                        90       100
                ....*....|....*....|....*...
gi 18416350 233 HACIKCGDLDAAMKFFNDMKEKAEEYYD 260
Cdd:COG4783  80 LALLKAGDYDEALALLEKALKLDPEHPE 107
COG2524 COG2524
Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription];
422-573 4.42e-03

Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription];


Pssm-ID: 442013 [Multi-domain]  Cd Length: 206  Bit Score: 38.71  E-value: 4.42e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350 422 GGMAAVRLETLLGFSKSILRPHLLSKVIPSEPIESIMirfeaTRPLLgTLQ----LKNVAMRFFKEQV--VPIVDDrGSC 495
Cdd:COG2524  56 LGLLLLLLLIVLQAAAVRVVAEKELGLVLKMKVKDIM-----TKDVI-TVSpdttLEEALELMLEKGIsgLPVVDD-GKL 128

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350 496 IGLLHREDC--------NNLDAPLVSMMRSPPTCVSTTTSIGRVVDLVLEKKLKMVIVVHCGNfsgsgyssKAVGAFTRA 567
Cdd:COG2524 129 VGIITERDLlkalaegrDLLDAPVSDIMTRDVVTVSEDDSLEEALRLMLEHGIGRLPVVDDDG--------KLVGIITRT 200


                ....*.
gi 18416350 568 QLYRLF 573
Cdd:COG2524 201 DILRAL 206
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 76-136 5.15e-03

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 39.85  E-value: 5.15e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18416350   76 NTIVMNSVLEACVHCGNIDLALRMFHEMAEPGGIGVDSISYATILKGLGKARRIDEAFQML 136
Cdd:PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485
CBS_pair_SF cd02205
Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily; The CBS ...
 473-546 5.36e-03

Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).


Pssm-ID: 341358 [Multi-domain]  Cd Length: 113  Bit Score: 36.84  E-value: 5.36e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350 473 LKNVAMRFFKEQV--VPIVDDRGSCIGLLHRED--------CNNLDAPLVSMMRSPPTCVSTTTSIGRVVDLVLEKKLKM 542
Cdd:cd02205  13 VREALELMAENGIgaLPVVDDDGKLVGIVTERDilralvegGLALDTPVAEVMTPDVITVSPDTDLEEALELMLEHGIRR 92


                ....
gi 18416350 543 VIVV 546
Cdd:cd02205  93 LPVV 96
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 263-294 7.97e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 34.24  E-value: 7.97e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 18416350   263 LQPDVVTYTTLVKGFGDATDLLSLQEIFLEMK 294
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
CBS COG0517
CBS domain [Signal transduction mechanisms];
486-546 9.37e-03

CBS domain [Signal transduction mechanisms];


Pssm-ID: 440283 [Multi-domain]  Cd Length: 128  Bit Score: 36.77  E-value: 9.37e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416350 486 VPIVDDRGSCIGLLHREDC---------NNLDAPLVSMMRSPPTCVSTTTSIGRVVDLVLEKKLKMVIVV 546
Cdd:COG0517  35 LPVVDEDGKLVGIVTDRDLrralaaegkDLLDTPVSEVMTRPPVTVSPDTSLEEAAELMEEHKIRRLPVV 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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