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    O-Glycosyl hydrolases family 17 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820558, updated on 18-Sep-2024

    Summary

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    Official Full Name
    O-Glycosyl hydrolases family 17 protein
    Primary source
    TAIR:AT3G13560
    Locus tag
    AT3G13560
    See related
    Araport:AT3G13560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (4425191..4428199, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 7 Neighboring gene ncRNA Neighboring gene Ubiquitin-conjugating enzyme family protein Neighboring gene SC35-like splicing factor 30A Neighboring gene Ribosomal protein L30/L7 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    2. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
    3. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001338055.1
    NM_001338056.1
    NM_112202.5
    NM_202573.3
    NM_202574.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glucan endo-1,3-beta-D-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    O-Glycosyl hydrolases family 17 protein
    NP_187965.1
    • O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G01630.1); Has 2864 Blast hits to 2791 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 51; Plants - 2798; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
    NP_974302.1
    • O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G01630.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974303.1
    • O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G01630.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4425191..4428199 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112202.5 → NP_187965.1  O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187965.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DGU2, Q94CD8, Q9LJD6
      UniProtKB/TrEMBL
      A0A5S9XBT5, A0A654F6U5
      Conserved Domains (2) summary
      smart00768
      Location:362 → 446
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:26 → 343
      Glyco_hydro; Glycosyl hydrolases

    2. NM_202574.3 → NP_974303.1  O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974303.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DGU2, Q94CD8, Q9LJD6
      UniProtKB/TrEMBL
      A0A5S9XBT5, A0A654F6U5
      Conserved Domains (2) summary
      smart00768
      Location:362 → 446
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:26 → 343
      Glyco_hydro; Glycosyl hydrolases

    3. NM_202573.3 → NP_974302.1  O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974302.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DGU2, Q94CD8, Q9LJD6
      UniProtKB/TrEMBL
      A0A5S9XBT5, A0A654F6U5
      Conserved Domains (2) summary
      smart00768
      Location:362 → 446
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:26 → 343
      Glyco_hydro; Glycosyl hydrolases

    4. NM_001338056.1 → NP_001326916.1  O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DGU2, Q94CD8, Q9LJD6
      UniProtKB/TrEMBL
      A0A5S9XBT5, A0A654F6U5
      Conserved Domains (2) summary
      smart00768
      Location:362 → 446
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:26 → 343
      Glyco_hydro; Glycosyl hydrolases

    5. NM_001338055.1 → NP_001326917.1  O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DGU2, Q94CD8, Q9LJD6
      UniProtKB/TrEMBL
      A0A5S9XBT5, A0A654F6U5
      Conserved Domains (2) summary
      smart00768
      Location:362 → 446
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:26 → 343
      Glyco_hydro; Glycosyl hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94CD8.1

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