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Conserved domains on  [gi|42572415|ref|NP_974303|]
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O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

Protein Classification

glycoside hydrolase family 17 protein( domain architecture ID 11042916)

glycoside hydrolase family 17 protein with a C-terminal X8 family carbohydrate-binding domain, such as glucan endo-1,3-beta-glucosidase, which breaks (1->3)-beta-D-glucosidic linkages in (1->3)-beta-D-glucans

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Glyco_hydro super family cl23725
Glycosyl hydrolases; A functionally diverse superfamily containing glycosyl hydrolase families ...
26-343 8.45e-76

Glycosyl hydrolases; A functionally diverse superfamily containing glycosyl hydrolase families 1,5,10,17,44,72, and others.


The actual alignment was detected with superfamily member pfam00332:

Pssm-ID: 474034  Cd Length: 309  Bit Score: 240.86  E-value: 8.45e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415    26 IGVNIGTDLTNMPPPSDIVTLLKSQQITHVRLYDANSHMLKAFANTSIEVMVGVTNEEILKIGRFPSAAAAWVNKNVAAY 105
Cdd:pfam00332   1 IGVNYGVKGNNLPSTCKVISLYKSNNIKDLRIYKPDTNVLNALAGSNIEVILNLPNQDLAALASFQSQAGGWVQDNIRPF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415   106 IPSTNITAIAVGSEVL-TTIPHVAPILASALNNIHKALVASNLNFKVKVSSPMSMDIMPKPFPPSTSTFSPSWNTTVYQL 184
Cdd:pfam00332  81 APKVKFKYIAVGNEISpGTSAGKYRFLVPAMANIYNALTAAGLSNKIKVSTSLVMGLLDNSYPPSYSTFREETKPFVDPI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415   185 LQFLKNTGSFFMLNAYPYYGYttANGIFPLDYALFKQLSPVkqivdpnTLLHYNSMFDAMVDAAYYSMEALNFSKIPVVV 264
Cdd:pfam00332 161 NGFLAGTNSPLLVNIYPYFVY--SNNNVSLDYALFQGQSQV-------NGLAYYNLFDAILDSVYFAQEKLGGTDIEIWV 231
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 42572415   265 TETGWPSSGGSdeaAATVANAETFNTNLIKRVlnNSGPPSQPDIPINTYIYELYNEDKRSGPVSERNWGILFPNGTSVY 343
Cdd:pfam00332 232 SETGWPSDGHP---GATLENAATYVRNLIQHV--KEGTPSKPGWGIETYVFAMFDENWKPGTSVEKHWGVFQPDKSPKY 305
X8 smart00768
Possibly involved in carbohydrate binding; The X8 domain, which may be involved in ...
362-446 1.29e-40

Possibly involved in carbohydrate binding; The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.


:

Pssm-ID: 197867 [Multi-domain]  Cd Length: 85  Bit Score: 140.85  E-value: 1.29e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415    362 FCVAKADADDDKLVDGLNWACGQGrANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKSAGGTCDFDGTAITTTRDPSY 441
Cdd:smart00768   2 WCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFSGTATITTTDPST 80

                   ....*
gi 42572415    442 RTCAY 446
Cdd:smart00768  81 GSCKF 85
 
Name Accession Description Interval E-value
Glyco_hydro_17 pfam00332
Glycosyl hydrolases family 17;
26-343 8.45e-76

Glycosyl hydrolases family 17;


Pssm-ID: 366033  Cd Length: 309  Bit Score: 240.86  E-value: 8.45e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415    26 IGVNIGTDLTNMPPPSDIVTLLKSQQITHVRLYDANSHMLKAFANTSIEVMVGVTNEEILKIGRFPSAAAAWVNKNVAAY 105
Cdd:pfam00332   1 IGVNYGVKGNNLPSTCKVISLYKSNNIKDLRIYKPDTNVLNALAGSNIEVILNLPNQDLAALASFQSQAGGWVQDNIRPF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415   106 IPSTNITAIAVGSEVL-TTIPHVAPILASALNNIHKALVASNLNFKVKVSSPMSMDIMPKPFPPSTSTFSPSWNTTVYQL 184
Cdd:pfam00332  81 APKVKFKYIAVGNEISpGTSAGKYRFLVPAMANIYNALTAAGLSNKIKVSTSLVMGLLDNSYPPSYSTFREETKPFVDPI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415   185 LQFLKNTGSFFMLNAYPYYGYttANGIFPLDYALFKQLSPVkqivdpnTLLHYNSMFDAMVDAAYYSMEALNFSKIPVVV 264
Cdd:pfam00332 161 NGFLAGTNSPLLVNIYPYFVY--SNNNVSLDYALFQGQSQV-------NGLAYYNLFDAILDSVYFAQEKLGGTDIEIWV 231
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 42572415   265 TETGWPSSGGSdeaAATVANAETFNTNLIKRVlnNSGPPSQPDIPINTYIYELYNEDKRSGPVSERNWGILFPNGTSVY 343
Cdd:pfam00332 232 SETGWPSDGHP---GATLENAATYVRNLIQHV--KEGTPSKPGWGIETYVFAMFDENWKPGTSVEKHWGVFQPDKSPKY 305
X8 smart00768
Possibly involved in carbohydrate binding; The X8 domain, which may be involved in ...
362-446 1.29e-40

Possibly involved in carbohydrate binding; The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.


Pssm-ID: 197867 [Multi-domain]  Cd Length: 85  Bit Score: 140.85  E-value: 1.29e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415    362 FCVAKADADDDKLVDGLNWACGQGrANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKSAGGTCDFDGTAITTTRDPSY 441
Cdd:smart00768   2 WCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFSGTATITTTDPST 80

                   ....*
gi 42572415    442 RTCAY 446
Cdd:smart00768  81 GSCKF 85
X8 pfam07983
X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that ...
363-433 8.05e-27

X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteriztic of GPI-anchored domains.


Pssm-ID: 400371  Cd Length: 76  Bit Score: 103.06  E-value: 8.05e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 42572415   363 CVAKADADDDKLVDGLNWACGQgrANCAAIQPGQP-----CYLPNDVKSHASFAFNDYYQKMKSAGGTCDFDGTAI 433
Cdd:pfam07983   3 CVAKDSVDDEDLQDLFDYACGQ--ADCSGIQANGTtgkygCYSPCTVKQHLSYAFNSYYQKQGKASSACDFSGSAT 76
Scw11 COG5309
Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism];
38-344 1.28e-05

Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism];


Pssm-ID: 444107  Cd Length: 512  Bit Score: 47.71  E-value: 1.28e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415  38 PPPSDIVTLLK--SQQITHVRLY---DANSHMLKAFANTSIEVMVGvtneeilkigrfpsaaaAWVNKN-------VAAY 105
Cdd:COG5309  58 PSEEQIKEDLKllAPYTKCIRTYsvtEGLEEVPELAAKHGLKVMLG-----------------AWLSGDpernereIEAL 120
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415 106 IPSTN-----ITAIAVGSEVL----TTiphvAPILASALNNIHKALvasnlnfKVKVsspmsmdimpkpfppstsTFSPS 176
Cdd:COG5309 121 IELANeypdiVKRVIVGNEVLlrgdLT----PEELIAYIRRVKAAV-------KVPV------------------TYADV 171
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415 177 WNttvyqllQFLKNTG-----SFFMLNAYPYYgyttaNGIfPLDYAlfkqlspVKQIVDpntllHYNSMFDAMVDaayys 251
Cdd:COG5309 172 WH-------FWLKHPEladavDFITIHILPYW-----EGV-PIERA-------LDYAKD-----RYDEVRAAFPG----- 221
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415 252 mealnfsKiPVVVTETGWPSSGGSDEAA-ATVANAETFNTNLIKRvLNNSGppsqpdipINTYIYELYNED-KRSGP-VS 328
Cdd:COG5309 222 -------K-PIIIGETGWPSAGRQRGGAvPSEVNQARYLREFLAW-ANEEG--------IDYFYFEAFDQPwKRALEgTV 284
                       330
                ....*....|....*.
gi 42572415 329 ERNWGILFPNGTSVYP 344
Cdd:COG5309 285 GAYWGLFDADRQPKFP 300
 
Name Accession Description Interval E-value
Glyco_hydro_17 pfam00332
Glycosyl hydrolases family 17;
26-343 8.45e-76

Glycosyl hydrolases family 17;


Pssm-ID: 366033  Cd Length: 309  Bit Score: 240.86  E-value: 8.45e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415    26 IGVNIGTDLTNMPPPSDIVTLLKSQQITHVRLYDANSHMLKAFANTSIEVMVGVTNEEILKIGRFPSAAAAWVNKNVAAY 105
Cdd:pfam00332   1 IGVNYGVKGNNLPSTCKVISLYKSNNIKDLRIYKPDTNVLNALAGSNIEVILNLPNQDLAALASFQSQAGGWVQDNIRPF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415   106 IPSTNITAIAVGSEVL-TTIPHVAPILASALNNIHKALVASNLNFKVKVSSPMSMDIMPKPFPPSTSTFSPSWNTTVYQL 184
Cdd:pfam00332  81 APKVKFKYIAVGNEISpGTSAGKYRFLVPAMANIYNALTAAGLSNKIKVSTSLVMGLLDNSYPPSYSTFREETKPFVDPI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415   185 LQFLKNTGSFFMLNAYPYYGYttANGIFPLDYALFKQLSPVkqivdpnTLLHYNSMFDAMVDAAYYSMEALNFSKIPVVV 264
Cdd:pfam00332 161 NGFLAGTNSPLLVNIYPYFVY--SNNNVSLDYALFQGQSQV-------NGLAYYNLFDAILDSVYFAQEKLGGTDIEIWV 231
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 42572415   265 TETGWPSSGGSdeaAATVANAETFNTNLIKRVlnNSGPPSQPDIPINTYIYELYNEDKRSGPVSERNWGILFPNGTSVY 343
Cdd:pfam00332 232 SETGWPSDGHP---GATLENAATYVRNLIQHV--KEGTPSKPGWGIETYVFAMFDENWKPGTSVEKHWGVFQPDKSPKY 305
X8 smart00768
Possibly involved in carbohydrate binding; The X8 domain, which may be involved in ...
362-446 1.29e-40

Possibly involved in carbohydrate binding; The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.


Pssm-ID: 197867 [Multi-domain]  Cd Length: 85  Bit Score: 140.85  E-value: 1.29e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415    362 FCVAKADADDDKLVDGLNWACGQGrANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKSAGGTCDFDGTAITTTRDPSY 441
Cdd:smart00768   2 WCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFSGTATITTTDPST 80

                   ....*
gi 42572415    442 RTCAY 446
Cdd:smart00768  81 GSCKF 85
X8 pfam07983
X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that ...
363-433 8.05e-27

X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteriztic of GPI-anchored domains.


Pssm-ID: 400371  Cd Length: 76  Bit Score: 103.06  E-value: 8.05e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 42572415   363 CVAKADADDDKLVDGLNWACGQgrANCAAIQPGQP-----CYLPNDVKSHASFAFNDYYQKMKSAGGTCDFDGTAI 433
Cdd:pfam07983   3 CVAKDSVDDEDLQDLFDYACGQ--ADCSGIQANGTtgkygCYSPCTVKQHLSYAFNSYYQKQGKASSACDFSGSAT 76
Scw11 COG5309
Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism];
38-344 1.28e-05

Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism];


Pssm-ID: 444107  Cd Length: 512  Bit Score: 47.71  E-value: 1.28e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415  38 PPPSDIVTLLK--SQQITHVRLY---DANSHMLKAFANTSIEVMVGvtneeilkigrfpsaaaAWVNKN-------VAAY 105
Cdd:COG5309  58 PSEEQIKEDLKllAPYTKCIRTYsvtEGLEEVPELAAKHGLKVMLG-----------------AWLSGDpernereIEAL 120
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415 106 IPSTN-----ITAIAVGSEVL----TTiphvAPILASALNNIHKALvasnlnfKVKVsspmsmdimpkpfppstsTFSPS 176
Cdd:COG5309 121 IELANeypdiVKRVIVGNEVLlrgdLT----PEELIAYIRRVKAAV-------KVPV------------------TYADV 171
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415 177 WNttvyqllQFLKNTG-----SFFMLNAYPYYgyttaNGIfPLDYAlfkqlspVKQIVDpntllHYNSMFDAMVDaayys 251
Cdd:COG5309 172 WH-------FWLKHPEladavDFITIHILPYW-----EGV-PIERA-------LDYAKD-----RYDEVRAAFPG----- 221
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572415 252 mealnfsKiPVVVTETGWPSSGGSDEAA-ATVANAETFNTNLIKRvLNNSGppsqpdipINTYIYELYNED-KRSGP-VS 328
Cdd:COG5309 222 -------K-PIIIGETGWPSAGRQRGGAvPSEVNQARYLREFLAW-ANEEG--------IDYFYFEAFDQPwKRALEgTV 284
                       330
                ....*....|....*.
gi 42572415 329 ERNWGILFPNGTSVYP 344
Cdd:COG5309 285 GAYWGLFDADRQPKFP 300
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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