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    AFP1 ABI five binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843257, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AFP1
    Official Full Name
    ABI five binding protein
    Primary source
    TAIR:AT1G69260
    Locus tag
    AT1G69260
    See related
    Araport:AT1G69260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ABI five binding protein; F4N2.22; F4N2_22
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    Genomic context

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    See AFP1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (26038905..26040720)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene receptor-like protein kinase 1 Neighboring gene uncharacterized protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis OXS3 family proteins repress ABA signaling through interactions with AFP1 in the regulation of ABI4 expression. Xiao S, et al. J Exp Bot, 2021 Jul 28. PMID 34037750
    2. ABI5-binding proteins (AFPs) alter transcription of ABA-induced genes via a variety of interactions with chromatin modifiers. Lynch TJ, et al. Plant Mol Biol, 2017 Mar. PMID 27942958
    3. AFP is a novel negative regulator of ABA signaling that promotes ABI5 protein degradation. Lopez-Molina L, et al. Genes Dev, 2003 Feb 1. PMID 12569131, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis OXS3 family proteins repress ABA signaling through interactions with AFP1 in the regulation of ABI4 expression.
      Title: Arabidopsis OXS3 family proteins repress ABA signaling through interactions with AFP1 in the regulation of ABI4 expression.
    2. Results suggest that the ABI5/ABF binding proteins (AFPs) AFP1 and AFP2 participate in multiple mechanisms modulating abscisic Acid (ABA) response.
      Title: ABI5-binding proteins (AFPs) alter transcription of ABA-induced genes via a variety of interactions with chromatin modifiers.
    Submit: New GeneRIF Correction

    General gene information

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    NM_105593.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within abscisic acid-activated signaling pathway TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABI five binding protein
    NP_564956.1
    • ABI five binding protein (AFP1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: ABI five binding protein 2 (TAIR:AT1G13740.1); Has 267 Blast hits to 267 proteins in 42 species: Archae - 0; Bacteria - 6; Metazoa - 29; Fungi - 9; Plants - 184; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26038905..26040720
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105593.5 → NP_564956.1  ABI five binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564956.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L8S9, Q9C980, Q9LQ98
      UniProtKB/TrEMBL
      A0A5S9WR47, A0A7G2E3E6
      Conserved Domains (3) summary
      pfam07897
      Location:46 → 74
      EAR; Ethylene-responsive binding factor-associated repression
      pfam16135
      Location:274 → 335
      Jas; TPL-binding domain in jasmonate signalling
      pfam16136
      Location:110 → 223
      NINJA_B; Putative nuclear localization signal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LQ98.1

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