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    beta-galactosidase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822417, updated on 18-Sep-2024

    Summary

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    Official Full Name
    beta-galactosidase
    Primary source
    TAIR:AT3G27930
    Locus tag
    AT3G27930
    See related
    Araport:AT3G27930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    14
    Sequence:
    Chromosome: 3; NC_003074.8 (10369298..10372534, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene DegP protease 1 Neighboring gene LOB domain-containing protein 26 Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of a novel β-barrel protein (AtOM47) from the mitochondrial outer membrane of Arabidopsis thaliana. Li L, et al. J Exp Bot, 2016 Nov. PMID 27811077, Free PMC Article
    2. Multiple lines of evidence localize signaling, morphology, and lipid biosynthesis machinery to the mitochondrial outer membrane of Arabidopsis. Duncan O, et al. Plant Physiol, 2011 Nov. PMID 21896887, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001203063.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables voltage-gated monoatomic anion channel activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of leaf senescence IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial outer membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    beta-galactosidase
    NP_001189992.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages.
    NP_566828.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 35 Blast hits to 35 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10369298..10372534 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113710.3 → NP_566828.1  beta-galactosidase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566828.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKK3, A0A384LHR4, A0A654FBC0, Q8W106
      Conserved Domains (1) summary
      cl03224
      Location:183 → 361
      Porin3; Eukaryotic porin family that forms channels in the mitochondrial outer membrane

    2. NM_001338922.1 → NP_001327075.1  beta-galactosidase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LR72, A0A654FBC0

    3. NM_001203063.1 → NP_001189992.1  beta-galactosidase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189992.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FBC0, F4IXS2
      Conserved Domains (1) summary
      cl03224
      Location:178 → 356
      Porin3; Eukaryotic porin family that forms channels in the mitochondrial outer membrane
    Nucleotide Protein
    Heading Accession and Version

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