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    Vacuolar iron transporter (VIT) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823461, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Vacuolar iron transporter (VIT) family protein
    Primary source
    TAIR:AT3G43630
    Locus tag
    AT3G43630
    See related
    Araport:AT3G43630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22J12.3
    Summary
    The gene encodes nodulin-like3 whose transcript abundance was repressed under conditions of Fe-deficient growth.
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (15538816..15539418)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Members of a small family of nodulin-like genes are regulated under iron deficiency in roots of Arabidopsis thaliana. Gollhofer J, et al. Plant Physiol Biochem, 2011 May. PMID 21411332
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables manganese ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular manganese ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to iron ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Vacuolar iron transporter (VIT) family protein
    NP_189949.1
    • Vacuolar iron transporter (VIT) family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: Vacuolar iron transporter (VIT) family protein (TAIR:AT3G43660.1); Has 1826 Blast hits to 1819 proteins in 633 species: Archae - 49; Bacteria - 1250; Metazoa - 0; Fungi - 98; Plants - 208; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      15538816..15539418
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114231.1 → NP_189949.1  Vacuolar iron transporter (VIT) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189949.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M2C3
      UniProtKB/TrEMBL
      A0A5S9XHM0, A0A7G2ETP4
      Conserved Domains (1) summary
      cl00278
      Location:26 → 166
      CCC1_like; CCC1-related family of proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M2C3.1

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